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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_034260.1 RefSeqGene
- Range
-
4993..161967
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_032888.4 → NP_116277.2 collagen alpha-1(XXVII) chain preproprotein
See identical proteins and their annotated locations for NP_116277.2
Status: REVIEWED
- Source sequence(s)
-
AI808820, AL356796, AL445543, AY149237, BC035728, BU076480
- Consensus CDS
-
CCDS6802.1
- UniProtKB/Swiss-Prot
- Q66K43, Q8IZC6, Q96JF7
- Related
- ENSP00000348385.3, ENST00000356083.8
- Conserved Domains (3) summary
-
- pfam01391
Location:694 → 752
- Collagen; Collagen triple helix repeat (20 copies)
- cl02436
Location:1661 → 1859
- COLFI; Fibrillar collagen C-terminal domain
- cl22861
Location:45 → 220
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000009.12 Reference GRCh38.p14 Primary Assembly
- Range
-
114154098..114312511
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011519138.3 → XP_011517440.1 collagen alpha-1(XXVII) chain isoform X1
- Conserved Domains (3) summary
-
- pfam01391
Location:692 → 750
- Collagen; Collagen triple helix repeat (20 copies)
- cl02436
Location:1659 → 1857
- COLFI; Fibrillar collagen C-terminal domain
- cl22861
Location:43 → 218
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
-
XM_047423992.1 → XP_047279948.1 collagen alpha-1(XXVII) chain isoform X4
-
XM_011519140.2 → XP_011517442.1 collagen alpha-1(XXVII) chain isoform X2
- Conserved Domains (3) summary
-
- pfam01391
Location:694 → 752
- Collagen; Collagen triple helix repeat (20 copies)
- cl02436
Location:1643 → 1841
- COLFI; Fibrillar collagen C-terminal domain
- cl22861
Location:45 → 220
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
-
XM_006717308.3 → XP_006717371.1 collagen alpha-1(XXVII) chain isoform X3
- Conserved Domains (3) summary
-
- pfam01391
Location:676 → 734
- Collagen; Collagen triple helix repeat (20 copies)
- cl02436
Location:1643 → 1841
- COLFI; Fibrillar collagen C-terminal domain
- cl22861
Location:45 → 220
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
-
XM_047423993.1 → XP_047279949.1 collagen alpha-1(XXVII) chain isoform X5
-
XM_011519143.3 → XP_011517445.1 collagen alpha-1(XXVII) chain isoform X7
- Conserved Domains (2) summary
-
- pfam01391
Location:694 → 752
- Collagen; Collagen triple helix repeat (20 copies)
- cl22861
Location:45 → 220
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
-
XM_011519144.3 → XP_011517446.1 collagen alpha-1(XXVII) chain isoform X8
- Conserved Domains (2) summary
-
- pfam01391
Location:694 → 752
- Collagen; Collagen triple helix repeat (20 copies)
- cl22861
Location:45 → 220
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
-
XM_011519142.4 → XP_011517444.1 collagen alpha-1(XXVII) chain isoform X6
- Conserved Domains (2) summary
-
- pfam01391
Location:694 → 752
- Collagen; Collagen triple helix repeat (20 copies)
- cl22861
Location:45 → 220
- LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
-
XM_017015239.2 → XP_016870728.1 collagen alpha-1(XXVII) chain isoform X9
-
XM_047423994.1 → XP_047279950.1 collagen alpha-1(XXVII) chain isoform X10
-
XM_047423995.1 → XP_047279951.1 collagen alpha-1(XXVII) chain isoform X12
-
XM_006717310.4 → XP_006717373.1 collagen alpha-1(XXVII) chain isoform X11
- Conserved Domains (2) summary
-
- pfam09606
Location:582 → 795
- Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
- cl02436
Location:887 → 1087
- COLFI; Fibrillar collagen C-terminal domain
-
XM_011519145.4 → XP_011517447.1 collagen alpha-1(XXVII) chain isoform X13
- Conserved Domains (2) summary
-
- pfam01391
Location:565 → 622
- Collagen; Collagen triple helix repeat (20 copies)
- cl02436
Location:850 → 1048
- COLFI; Fibrillar collagen C-terminal domain
RNA
-
XR_929860.4 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060933.1 Alternate T2T-CHM13v2.0
- Range
-
126352719..126511655
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054364055.1 → XP_054220030.1 collagen alpha-1(XXVII) chain isoform X1
-
XM_054364058.1 → XP_054220033.1 collagen alpha-1(XXVII) chain isoform X4
-
XM_054364056.1 → XP_054220031.1 collagen alpha-1(XXVII) chain isoform X2
-
XM_054364057.1 → XP_054220032.1 collagen alpha-1(XXVII) chain isoform X3
-
XM_054364059.1 → XP_054220034.1 collagen alpha-1(XXVII) chain isoform X5
-
XM_054364061.1 → XP_054220036.1 collagen alpha-1(XXVII) chain isoform X7
-
XM_054364062.1 → XP_054220037.1 collagen alpha-1(XXVII) chain isoform X8
-
XM_054364060.1 → XP_054220035.1 collagen alpha-1(XXVII) chain isoform X6
-
XM_054364063.1 → XP_054220038.1 collagen alpha-1(XXVII) chain isoform X9
-
XM_054364064.1 → XP_054220039.1 collagen alpha-1(XXVII) chain isoform X10
-
XM_054364066.1 → XP_054220041.1 collagen alpha-1(XXVII) chain isoform X12
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XM_054364065.1 → XP_054220040.1 collagen alpha-1(XXVII) chain isoform X11
-
XM_054364067.1 → XP_054220042.1 collagen alpha-1(XXVII) chain isoform X13
RNA
-
XR_008488095.1 RNA Sequence
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_032161.1: Suppressed sequence
- Description
- NM_032161.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.