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    AS012_gp1 polyprotein [ hepatovirus H2 ]

    Gene ID: 26196486, updated on 7-May-2023

    Summary

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    Gene symbol
    AS012_gp1
    Gene description
    polyprotein
    Locus tag
    AS012_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    hepatovirus H2 (isolate: M32Eidhel2010, nat-host: Eidolon helvum)
    Lineage
    Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Heptrevirinae; Hepatovirus
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    Genomic context

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    Sequence:
    NC_028366.1 (561..7256)

    NC_028366.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_028366.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolutionary origins of hepatitis A virus in small mammals. Drexler JF, et al. Proc Natl Acad Sci U S A, 2015 Dec 8. PMID 26575627, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    polyprotein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_028366.1 Reference assembly

      Range
      561..7256
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_009179216.1 polyprotein [hepatovirus H2]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0S1M3B7
      Conserved Domains (6) summary
      cd00205
      Location:300 → 483
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
      pfam00073
      Location:49 → 213
      Rhv; picornavirus capsid protein
      pfam00548
      Location:1552 → 1715
      Peptidase_C3; 3C cysteine protease (picornain 3C)
      pfam00910
      Location:1219 → 1322
      RNA_helicase; RNA helicase
      pfam12944
      Location:548 → 715
      HAV_VP; Hepatitis A virus viral protein VP
      cl02808
      Location:1753 → 2220
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
    Nucleotide Protein
    Heading Accession and Version

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