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    LOC105210722 transformer-2 sex-determining protein [ Zeugodacus cucurbitae (melon fly) ]

    Gene ID: 105210722, updated on 10-May-2024

    Summary

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    Gene symbol
    LOC105210722
    Gene description
    transformer-2 sex-determining protein
    See related
    EnsemblRapid:LOC105210722
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Zeugodacus cucurbitae
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Tephritoidea; Tephritidae; Zeugodacus; Zeugodacus
    Also known as
    tra2_1; tra2_2
    Orthologs
    fruit fly all
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    Genomic context

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    See LOC105210722 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_03 current idZeuCucr1.2 (GCF_028554725.1) 6 NC_071671.1 (23968407..23971306)
    101 previous assembly ASM80634v1 (GCF_000806345.1) Unplaced Scaffold NW_011863687.1 (1227184..1230842, complement)

    Chromosome 6 - NC_071671.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105210726 Neighboring gene Acyl-CoA synthetase long-chain Neighboring gene uncharacterized LOC128922472 Neighboring gene WAS/WASL-interacting protein family member 1 Neighboring gene biogenesis of lysosome-related organelles complex 1 subunit 1 Neighboring gene uncharacterized LOC105210719

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Reconstructing a comprehensive transcriptome assembly of a white-pupal translocated strain of the pest fruit fly Bactrocera cucurbitae. Sim SB, et al. Gigascience, 2015. PMID 25830018, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transformer-2 sex-determining protein
    Names
    transformer 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028554725.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference idZeuCucr1.2 Primary Assembly

    Genomic

    1. NC_071671.1 Reference idZeuCucr1.2 Primary Assembly

      Range
      23968407..23971306
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011181845.3 → XP_011180147.1  transformer-2 sex-determining protein isoform X1

      UniProtKB/TrEMBL
      A0A0A1XI74
      Related
      XP_011180147.1, XM_011181845.3
      Conserved Domains (2) summary
      COG0724
      Location:98 → 185
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12363
      Location:109 → 186
      RRM_TRA2; RNA recognition motif in transformer-2 protein homolog TRA2-alpha, TRA2-beta and similar proteins

    2. XM_011181847.3 → XP_011180149.1  transformer-2 sex-determining protein isoform X3

      UniProtKB/TrEMBL
      A0A0A1XGQ8, A0A0M4MWX8
      Related
      XP_011180149.1, XM_011181847.3
      Conserved Domains (2) summary
      COG0724
      Location:95 → 180
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12363
      Location:104 → 181
      RRM_TRA2; RNA recognition motif in transformer-2 protein homolog TRA2-alpha, TRA2-beta and similar proteins

    3. XM_011181846.3 → XP_011180148.1  transformer-2 sex-determining protein isoform X2

      UniProtKB/TrEMBL
      A0A0A1XI74
      Related
      XP_011180148.1, XM_011181846.3
      Conserved Domains (2) summary
      COG0724
      Location:94 → 181
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12363
      Location:105 → 182
      RRM_TRA2; RNA recognition motif in transformer-2 protein homolog TRA2-alpha, TRA2-beta and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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