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    LOC106169156 aspartate--tRNA ligase, mitochondrial-like [ Lingula anatina ]

    Gene ID: 106169156, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC106169156
    Gene description
    aspartate--tRNA ligase, mitochondrial-like
    See related
    EnsemblRapid:LOC106169156
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lingula anatina
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Brachiopoda; Linguliformea; Lingulata; Lingulida; Linguloidea; Lingulidae; Lingula
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    Genomic context

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    See LOC106169156 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    101 current LinAna2.0 (GCF_001039355.2) Unplaced Scaffold NW_019775440.1 (227055..232392)
    100 previous assembly LinAna1.0 (GCF_001039355.1) Unplaced Scaffold NW_013579122.1 (209294..214631)

    NW_019775440.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106169160 Neighboring gene uncharacterized LOC106169155 Neighboring gene aspartate--tRNA ligase, mitochondrial Neighboring gene protein artichoke Neighboring gene insulin-like growth factor-binding protein complex acid labile subunit

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables aspartate-tRNA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in aspartyl-tRNA aminoacylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    aspartate--tRNA ligase, mitochondrial-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lingula anatina Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference LinAna2.0 Primary Assembly

    Genomic

    1. NW_019775440.1 Reference LinAna2.0 Primary Assembly

      Range
      227055..232392
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013548522.1 → XP_013403976.1  aspartate--tRNA ligase, mitochondrial-like

      UniProtKB/TrEMBL
      A0A1S3J142
      Related
      XP_013403976.1, XM_013548522.1
      Conserved Domains (1) summary
      cd04317
      Location:43 → 159
      EcAspRS_like_N; EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) ...
    Nucleotide Protein
    Heading Accession and Version

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