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    HSF-30 heat stress transcription factor 30 [ Glycine max (soybean) ]

    Gene ID: 100778558, updated on 7-Dec-2023

    Summary

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    Gene symbol
    HSF-30
    Gene description
    heat stress transcription factor 30
    Locus tag
    GLYMA_14G096800v4
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
    Also known as
    GmHSF-30
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    Genomic context

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    See HSF-30 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 14 NC_038250.2 (9357918..9361642)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 14 NC_038250.1 (9106504..9110209)

    Chromosome 14 - NC_038250.2Genomic Context describing neighboring genes Neighboring gene glutaredoxin-C6 Neighboring gene uncharacterized LOC106796020 Neighboring gene cytochrome P450 711A1 Neighboring gene protein IQ-DOMAIN 50

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Isolation and characterization of six heat shock transcription factor cDNA clones from soybean. Czarnecka-Verner E, et al. Plant Mol Biol, 1995 Oct. PMID 7579166
    2. Genome-wide analysis of the Hsf family in soybean and functional identification of GmHsf-34 involvement in drought and heat stresses. Li PS, et al. BMC Genomics, 2014 Nov 21. PMID 25416131, Free PMC Article
    3. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. Chai C, et al. BMC Genomics, 2015 Aug 13. PMID 26268547, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heat stress transcription factor Hsf-30
    Names
    heat shock transcription factor 21
    heat stress transcription factor A-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001317487.2 → NP_001304416.2  heat stress transcription factor Hsf-30

      Status: VALIDATED

      Source sequence(s)
      ACUP04004904, KT031161
      UniProtKB/TrEMBL
      A0A0K2CTP7, I1M939
      Conserved Domains (1) summary
      smart00415
      Location:42 → 135
      HSF; heat shock factor

    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038250.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      9357918..9361642
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_417929.3 RNA Sequence

    2. XR_417930.3 RNA Sequence

    3. XR_417931.3 RNA Sequence

    4. XR_417928.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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