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    LOC107032143 2-isopropylmalate synthase A-like [ Solanum pennellii ]

    Gene ID: 107032143, updated on 11-Apr-2024

    Summary

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    Gene symbol
    LOC107032143
    Gene description
    2-isopropylmalate synthase A-like
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Solanum pennellii
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    Location:
    chromosome: 10
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    101 current SPENNV200 (GCF_001406875.1) 10 NC_028646.1 (5090534..5095200, complement)

    Chromosome 10 - NC_028646.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107032661 Neighboring gene uncharacterized LOC107032662 Neighboring gene ubiquitin-conjugating enzyme E2 4-like Neighboring gene transfer RNA tyrosine (anticodon GUA)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_028646.1 Chromosome 10 Reference SPENNV200

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Feedback-Insensitive Isopropylmalate Synthase Affects Acylsugar Composition in Cultivated and Wild Tomato. Ning J, et al. Plant Physiol, 2015 Nov. PMID 25986128, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 2-isopropylmalate synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-leucine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    2-isopropylmalate synthase A-like
    Names
    IPMS3-1282-L
    IPMS3-1356-1-L
    IPMS3-1367-3-L
    IPMS3-1376-1-L
    IPMS3-1376-1-S
    IPMS3-1649-1-L
    IPMS3-1809-1-L
    IPMS3-1911-2-L
    IPMS3-2560-2-L
    IPMS3-2657-3-L
    IPMS3-2963-4-S

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001323473.1 → NP_001310402.1  2-isopropylmalate synthase A-like

      Status: PROVISIONAL

      Source sequence(s)
      KP885662
      UniProtKB/TrEMBL
      A0A0G2T6D7, A0A0G2T6E4
      Conserved Domains (2) summary
      cd07940
      Location:54 → 333
      DRE_TIM_IPMS; 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain
      pfam00682
      Location:52 → 331
      HMGL-like; HMGL-like

    RefSeqs of Annotated Genomes: Solanum pennellii Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SPENNV200

    Genomic

    1. NC_028646.1 Reference SPENNV200

      Range
      5090534..5095200 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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