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    GGPPS geranylgeranyl pyrophosphate synthase, chloroplastic-like [ Jatropha curcas ]

    Gene ID: 105638587, updated on 14-Dec-2023

    Summary

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    Gene symbol
    GGPPS
    Gene description
    geranylgeranyl pyrophosphate synthase, chloroplastic-like
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Jatropha curcas
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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    Genomic context

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    See GGPPS in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current RJC1_Hi-C (GCF_014843425.1) Unplaced Scaffold NW_023590806.1 (1577768..1579852, complement)
    101 previous assembly JatCur_1.0 (GCF_000696525.1) Unplaced Scaffold NW_012124408.1 (247552..248954, complement)

    NW_023590806.1Genomic Context describing neighboring genes Neighboring gene geranylgeranyl pyrophosphate synthase, chloroplastic-like Neighboring gene geranylgeranyl pyrophosphate synthase, chloroplastic Neighboring gene valine--tRNA ligase, chloroplastic/mitochondrial 2 Neighboring gene pentatricopeptide repeat-containing protein At1g66345, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables prenyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in isoprenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    geranylgeranyl pyrophosphate synthase, chloroplastic-like
    Names
    geranylgeranyl diphosphate synthase
    NP_001295715.1
    XP_037492387.1
    XP_037492388.1
    XP_037492389.1
    XP_037492390.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001308786.1 → NP_001295715.1  geranylgeranyl pyrophosphate synthase, chloroplastic-like

      See identical proteins and their annotated locations for NP_001295715.1

      Status: PROVISIONAL

      Source sequence(s)
      GU585938
      UniProtKB/TrEMBL
      A0A067KAJ8, D4P8I4
      Conserved Domains (1) summary
      cd00685
      Location:103 → 368
      Trans_IPPS_HT; Trans-Isoprenyl Diphosphate Synthases, head-to-tail

    RefSeqs of Annotated Genomes: Jatropha curcas Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference RJC1_Hi-C Primary Assembly

    Genomic

    1. NW_023590806.1 Reference RJC1_Hi-C Primary Assembly

      Range
      1577768..1579852 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_037636459.1 → XP_037492387.1  geranylgeranyl pyrophosphate synthase, chloroplastic-like isoform X1

      UniProtKB/TrEMBL
      A0A067KAJ8
      Conserved Domains (1) summary
      cd00685
      Location:103 → 368
      Trans_IPPS_HT; Trans-Isoprenyl Diphosphate Synthases, head-to-tail

    2. XM_037636462.1 → XP_037492390.1  geranylgeranyl pyrophosphate synthase, chloroplastic-like isoform X4

      UniProtKB/TrEMBL
      A0A067KAJ8
      Conserved Domains (1) summary
      cd00685
      Location:103 → 371
      Trans_IPPS_HT; Trans-Isoprenyl Diphosphate Synthases, head-to-tail

    3. XM_037636461.1 → XP_037492389.1  geranylgeranyl pyrophosphate synthase, chloroplastic-like isoform X3

      UniProtKB/TrEMBL
      A0A067KAJ8
      Conserved Domains (1) summary
      cd00685
      Location:103 → 368
      Trans_IPPS_HT; Trans-Isoprenyl Diphosphate Synthases, head-to-tail

    4. XM_037636460.1 → XP_037492388.1  geranylgeranyl pyrophosphate synthase, chloroplastic-like isoform X2

      UniProtKB/TrEMBL
      A0A067KAJ8
      Conserved Domains (1) summary
      cd00685
      Location:103 → 368
      Trans_IPPS_HT; Trans-Isoprenyl Diphosphate Synthases, head-to-tail
    Nucleotide Protein
    Heading Accession and Version

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