U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    Xlr3a X-linked lymphocyte-regulated 3A [ Mus musculus (house mouse) ]

    Gene ID: 22445, updated on 2-Nov-2024

    Summary

    Official Symbol
    Xlr3aprovided by MGI
    Official Full Name
    X-linked lymphocyte-regulated 3Aprovided by MGI
    Primary source
    MGI:MGI:109506
    See related
    Ensembl:ENSMUSG00000057836 AllianceGenome:MGI:109506
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Xlr3
    Summary
    Predicted to be involved in meiotic cell cycle and spermatid development. Predicted to be active in synaptonemal complex. Is expressed in several structures, including blood; central nervous system; female reproductive system; sensory organ; and submandibular gland primordium. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in placenta adult (RPKM 19.3), liver E18 (RPKM 4.2) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Xlr3a in Genome Data Viewer
    Location:
    X A7.3; X 37.29 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (72129899..72140701, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (73086293..73097095, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene paraneoplastic antigen MA3 Neighboring gene X-linked lymphocyte-regulated 4A Neighboring gene X-linked lymphocyte-regulated 5A Neighboring gene PWWP domain containing 4A Neighboring gene PWWP domain containing 4B Neighboring gene X-linked lymphocyte-regulated 5B

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC102490, MGC130195, MGC130233, MGC156362, MGC156363

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in meiotic cell cycle IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in spermatid development IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in synaptonemal complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    X-linked lymphocyte-regulated protein 3A
    Names
    X-linked B-cell surface antigen 3a
    X-linked lymphocyte regulated 3

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001110784.1NP_001104254.1  X-linked lymphocyte-regulated protein 3A

      See identical proteins and their annotated locations for NP_001104254.1

      Status: VALIDATED

      Source sequence(s)
      AW556788, BC107255, BQ885410, BX813330, CJ302076, DV662513
      Consensus CDS
      CCDS53092.1
      UniProtKB/Swiss-Prot
      Q61244, Q61806
      UniProtKB/TrEMBL
      Q99L59
      Related
      ENSMUSP00000074199.6, ENSMUST00000074619.6
      Conserved Domains (1) summary
      pfam04803
      Location:72187
      Cor1; Cor1/Xlr/Xmr conserved region

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      72129899..72140701 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011247556.1XP_011245858.1  X-linked lymphocyte-regulated protein 3A isoform X1

      See identical proteins and their annotated locations for XP_011245858.1

      UniProtKB/Swiss-Prot
      Q60595, Q61244, Q61806
      UniProtKB/TrEMBL
      Q78PE0
      Related
      ENSMUSP00000110170.3, ENSMUST00000114524.9
      Conserved Domains (1) summary
      pfam04803
      Location:75203
      Cor1; Cor1/Xlr/Xmr conserved region
    2. XM_011247557.1XP_011245859.1  X-linked lymphocyte-regulated protein 3A isoform X1

      See identical proteins and their annotated locations for XP_011245859.1

      UniProtKB/Swiss-Prot
      Q60595, Q61244, Q61806
      UniProtKB/TrEMBL
      Q78PE0
      Conserved Domains (1) summary
      pfam04803
      Location:75203
      Cor1; Cor1/Xlr/Xmr conserved region
    3. XM_011247559.1XP_011245861.1  X-linked lymphocyte-regulated protein 3A isoform X3

      See identical proteins and their annotated locations for XP_011245861.1

      Conserved Domains (1) summary
      pfam04803
      Location:1116
      Cor1; Cor1/Xlr/Xmr conserved region
    4. XM_011247558.3XP_011245860.1  X-linked lymphocyte-regulated protein 3A isoform X2

      See identical proteins and their annotated locations for XP_011245860.1

      Conserved Domains (1) summary
      pfam04803
      Location:75179
      Cor1; Cor1/Xlr/Xmr conserved region

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_011726.1: Suppressed sequence

      Description
      NM_011726.1: This RefSeq was temporarily suppressed because currently there is not sufficient data to support this transcript.