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    ft cadherin-related tumor suppressor fat [ Fopius arisanus ]

    Gene ID: 105273363, updated on 10-Oct-2024

    Summary

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    Gene symbol
    ft
    Gene description
    cadherin-related tumor suppressor fat
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Fopius arisanus
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Ichneumonoidea; Braconidae; Opiinae; Fopius
    Also known as
    ft_1
    Orthologs
    fruit fly honey bee all
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    Genomic context

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    Location:
    chromosome: Un
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_07 current ASM80636v1 (GCF_000806365.1) Unplaced Scaffold NW_011887744.1 (999952..1078885, complement)

    NW_011887744.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein KIAA1143 homolog Neighboring gene uncharacterized protein C1orf198 homolog Neighboring gene uncharacterized LOC105273367 Neighboring gene FCF1 rRNA-processing protein Bka

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_011887744 Unplaced Scaffold Reference ASM80636v1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cadherin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in adherens junction organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell adhesion mediated by cadherin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell junction assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in adherens junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of catenin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cadherin-related tumor suppressor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000806365.1-RS_2024_07

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM80636v1

    Genomic

    1. NW_011887744.1 Reference ASM80636v1

      Range
      999952..1078885 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011315764.1 → XP_011314066.1  cadherin-related tumor suppressor

      UniProtKB/TrEMBL
      A0A9R1U9K6
      Conserved Domains (6) summary
      cd11304
      Location:3461 → 3558
      Cadherin_repeat; Cadherin tandem repeat domain
      cd00054
      Location:3994 → 4028
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00055
      Location:3900 → 3929
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      pfam00008
      Location:3918 → 3946
      EGF; EGF-like domain
      pfam02210
      Location:4330 → 4455
      Laminin_G_2; Laminin G domain
      cl22861
      Location:4056 → 4208
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    Nucleotide Protein Strain
    Heading Accession and Version

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