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    Gm12216 predicted gene 12216 [ Mus musculus (house mouse) ]

    Gene ID: 622459, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gm12216provided by MGI
    Official Full Name
    predicted gene 12216provided by MGI
    Primary source
    MGI:MGI:3650088
    See related
    Ensembl:ENSMUSG00000081769 AllianceGenome:MGI:3650088
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    602-19-115
    Expression
    Broad expression in lung adult (RPKM 4.6), large intestine adult (RPKM 2.8) and 17 other tissues See more
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    Genomic context

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    See Gm12216 in Genome Data Viewer
    Location:
    11 B1.3; 11 32.0 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (53676315..53750082, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (53785489..53859256, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:53576931-53577191 Neighboring gene STARR-positive B cell enhancer ABC_E6982 Neighboring gene STARR-positive B cell enhancer ABC_E10675 Neighboring gene microRNA 7671 Neighboring gene interferon regulatory factor 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:53608789-53608996 Neighboring gene STARR-seq mESC enhancer starr_29497 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:53659189-53659448 Neighboring gene predicted gene, 30785 Neighboring gene solute carrier family 22 (organic cation transporter), member 5 Neighboring gene STARR-positive B cell enhancer mm9_chr11:53705301-53705602 Neighboring gene STARR-seq mESC enhancer starr_29501 Neighboring gene solute carrier family 22 (organic cation transporter), member 4 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Identification of 40 genes on a 1-Mb contig around the IL-4 cytokine family gene cluster on mouse chromosome 11. Wenderfer SE, et al. Genomics, 2000 Feb 1. PMID 10704283
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033332.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      AK138811
      Related
      ENSMUST00000117316.8

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      53676315..53750082 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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