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    si:ch211-236h17.3 carbohydrate sulfotransferase 11-like [ Notothenia coriiceps (black rockcod) ]

    Gene ID: 104944027, updated on 12-Mar-2024

    Summary

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    Gene symbol
    si:ch211-236h17.3
    Gene description
    carbohydrate sulfotransferase 11-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Notothenia coriiceps
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Notothenioidei; Nototheniidae; Notothenia
    Orthologs
    zebrafish all
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    Genomic context

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    See si:ch211-236h17.3 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    100 current NC01 (GCF_000735185.1) Unplaced Scaffold NW_011340074.1 (1485..3076)

    NW_011340074.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 41 member 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_011340074.1 Unplaced Scaffold Reference NC01 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables sulfotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteoglycan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    carbohydrate sulfotransferase 11-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Notothenia coriiceps Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NC01 Primary Assembly

    Genomic

    1. NW_011340074.1 Reference NC01 Primary Assembly

      Range
      1485..3076
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010769493.1 → XP_010767795.1  carbohydrate sulfotransferase 11-like

      UniProtKB/TrEMBL
      A0A6I9N1D5
      Conserved Domains (1) summary
      pfam03567
      Location:41 → 272
      Sulfotransfer_2; Sulfotransferase family
    Nucleotide Protein
    Heading Accession and Version

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