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    Dmrtc1a DMRT-like family C1a [ Rattus norvegicus (Norway rat) ]

    Gene ID: 108348153, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Dmrtc1aprovided by RGD
    Official Full Name
    DMRT-like family C1aprovided by RGD
    Primary source
    RGD:11451771
    See related
    EnsemblRapid:ENSRNOG00000048295 AllianceGenome:RGD:11451771
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Dmrtc1
    Summary
    Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Orthologous to several human genes including DMRTC1 (DMRT like family C1). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See Dmrtc1a in Genome Data Viewer
    Location:
    Xq22
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (71861910..71892508)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (67822187..67852572)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (72624660..72654258)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene phosphorylase kinase regulatory subunit alpha 1 Neighboring gene ribosomal protein S27a, pseudogene 3 Neighboring gene NSA2 ribosome biogenesis factor, pseudogene 16 Neighboring gene doublesex- and mab-3-related transcription factor C1-like Neighboring gene spindlin 1, pseudogene 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC114388

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    doublesex- and mab-3-related transcription factor C1
    Names
    DMRT like family C1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001025288.1 → NP_001020459.1  doublesex- and mab-3-related transcription factor C1

      See identical proteins and their annotated locations for NP_001020459.1

      Status: PROVISIONAL

      Source sequence(s)
      BC097356
      UniProtKB/Swiss-Prot
      Q4QR87
      UniProtKB/TrEMBL
      A0A8I6AUD9
      Related
      ENSRNOP00000069916.1, ENSRNOT00000089965.3
      Conserved Domains (1) summary
      pfam15791
      Location:113 → 223
      DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      71861910..71892508
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063279727.1 → XP_063135797.1  doublesex- and mab-3-related transcription factor C1 isoform X3

    2. XM_039099390.2 → XP_038955318.1  doublesex- and mab-3-related transcription factor C1 isoform X2

      UniProtKB/TrEMBL
      A0A8I6A6M7, A0A8I6AUD9
      Related
      ENSRNOP00000087084.1, ENSRNOT00000117626.2
      Conserved Domains (1) summary
      pfam15791
      Location:146 → 258
      DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2

    3. XM_039099389.2 → XP_038955317.1  doublesex- and mab-3-related transcription factor C1 isoform X1

      Conserved Domains (1) summary
      pfam15791
      Location:176 → 288
      DMRT-like; Doublesex-and mab-3-related transcription factor C1 and C2
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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