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    LINC02615 long intergenic non-protein coding RNA 2615 [ Homo sapiens (human) ]

    Gene ID: 100507487, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC02615provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2615provided by HGNC
    Primary source
    HGNC:HGNC:53402
    See related
    Ensembl:ENSG00000251432 AllianceGenome:HGNC:53402
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in skin (RPKM 2.9), testis (RPKM 1.0) and 21 other tissues See more
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    Genomic context

    See LINC02615 in Genome Data Viewer
    Location:
    4q28.2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (128428016..128519398)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (131732138..131823565)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (129349171..129440553)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene La ribonucleoprotein 1B Neighboring gene FOSL1 pseudogene 1 Neighboring gene NANOG hESC enhancer GRCh37_chr4:129186588-129187089 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:129197563-129197760 Neighboring gene Sharpr-MPRA regulatory region 13521 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15681 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15682 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15683 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15684 Neighboring gene Sharpr-MPRA regulatory region 12082 Neighboring gene progesterone receptor membrane component 2 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:129242766-129243328 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:129271007-129271585 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:129271620-129272158 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:129283869-129284407 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:129308825-129310024 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_73985 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_73994 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:129337187-129337688 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:129337689-129338188 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:129390695-129391894 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_74020 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15685 Neighboring gene NFE2L2 motif-containing MPRA enhancer 199 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:129456135-129456788 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:129456789-129457442 Neighboring gene uncharacterized LOC101927259 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21890 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21891 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:129487118-129487618 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:129487619-129488119 Neighboring gene long intergenic non-protein coding RNA 3140

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125882.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK093416, BX094123, DB242327
      Related
      ENST00000511497.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      128428016..128519398
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      131732138..131823565
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)