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    LOC18427150 probable auxin efflux carrier component 1c [ Amborella trichopoda ]

    Gene ID: 18427150, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC18427150
    Gene description
    probable auxin efflux carrier component 1c
    Locus tag
    AMTR_s00101p00149240
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Amborella trichopoda
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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    Genomic context

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    See LOC18427150 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006497357.1 (2205044..2208961)

    NW_006497357.1Genomic Context describing neighboring genes Neighboring gene hydroxymethylglutaryl-CoA lyase, mitochondrial Neighboring gene digalactosyldiacylglycerol synthase 2, chloroplastic Neighboring gene transcription factor bHLH30 Neighboring gene 50S ribosomal protein L4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_006497357.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Paralogous radiations of PIN proteins with multiple origins of noncanonical PIN structure. Bennett T, et al. Mol Biol Evol, 2014 Aug. PMID 24758777, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables auxin efflux transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in auxin export across the plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in auxin polar transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable auxin efflux carrier component 1c
    Names
    PIN-like protein
    probable auxin efflux carrier component 1b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference AMTR1.0 Primary Assembly

    Genomic

    1. NW_006497357.1 Reference AMTR1.0 Primary Assembly

      Range
      2205044..2208961
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020662916.1 → XP_020518575.1  probable auxin efflux carrier component 1c

      UniProtKB/TrEMBL
      W1NQD1
      Conserved Domains (2) summary
      pfam03547
      Location:9 → 190
      Mem_trans; Membrane transport protein
      cl22894
      Location:436 → 551
      Mem_trans; Membrane transport protein
    Nucleotide Protein
    Heading Accession and Version

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