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    MAP1LC3B microtubule associated protein 1 light chain 3 beta [ Callithrix jacchus (white-tufted-ear marmoset) ]

    Gene ID: 100410303, updated on 8-Mar-2024

    Summary

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    Gene symbol
    MAP1LC3B
    Gene description
    microtubule associated protein 1 light chain 3 beta
    See related
    Ensembl:ENSCJAG00000004473
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callithrix jacchus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
    Orthologs
    human mouse all
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    Genomic context

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    See MAP1LC3B in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 20 NC_071461.1 (41627459..41639858)
    105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 20 NC_048402.1 (42636711..42649222)

    Chromosome 20 - NC_071461.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC128930315 Neighboring gene F-box protein 31 Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene uncharacterized LOC128930317 Neighboring gene zinc finger CCHC-type containing 14 Neighboring gene translation initiation factor IF-2-like Neighboring gene uncharacterized LOC118149676

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in autophagosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in autophagy of mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cellular response to nitrogen starvation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in macroautophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in autophagosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in autophagosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    microtubule-associated proteins 1A/1B light chain 3B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCalJa1.2.pat.X

    Genomic

    1. NC_071461.1 Reference mCalJa1.2.pat.X

      Range
      41627459..41639858
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008986336.4 → XP_008984584.1  microtubule-associated proteins 1A/1B light chain 3B

      Related
      ENSCJAP00000008102.2
      Conserved Domains (1) summary
      cd01611
      Location:7 → 120
      GABARAP; Ubiquitin domain of GABA-receptor-associated protein
    Nucleotide Protein
    Heading Accession and Version

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