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    ZNRF1 zinc and ring finger 1 [ Callithrix jacchus (white-tufted-ear marmoset) ]

    Gene ID: 100389397, updated on 6-Jun-2024

    Summary

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    Gene symbol
    ZNRF1
    Gene description
    zinc and ring finger 1
    See related
    Ensembl:ENSCJAG00000014378
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callithrix jacchus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
    Orthologs
    human mouse all
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    Genomic context

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    See ZNRF1 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 20 NC_071461.1 (28998619..29120221)
    105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 20 NC_048402.1 (29994974..30117146)

    Chromosome 20 - NC_071461.1Genomic Context describing neighboring genes Neighboring gene WD repeat domain 59 Neighboring gene 60S ribosomal protein L7-like 1 Neighboring gene patr class I histocompatibility antigen, A-108 alpha chain-like Neighboring gene U6 spliceosomal RNA Neighboring gene zinc finger protein 260-like Neighboring gene dnaJ homolog subfamily A member 1-like Neighboring gene lactate dehydrogenase D Neighboring gene ZFP1 zinc finger protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase ZNRF1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCalJa1.2.pat.X

    Genomic

    1. NC_071461.1 Reference mCalJa1.2.pat.X

      Range
      28998619..29120221
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003735326.5 → XP_003735374.1  E3 ubiquitin-protein ligase ZNRF1 isoform X2

      See identical proteins and their annotated locations for XP_003735374.1

      UniProtKB/TrEMBL
      F7HQ83, U3C0T4
      Related
      ENSCJAP00000026444.2
      Conserved Domains (1) summary
      cd16694
      Location:182 → 227
      mRING-CH-C4HC2H_ZNRF1; Modified RING-CH finger, H2 subclass (C4HC2H-type), found in zinc/RING finger protein 1 (ZNRF1) and similar proteins

    2. XM_054248516.1 → XP_054104491.1  E3 ubiquitin-protein ligase ZNRF1 isoform X2

      UniProtKB/TrEMBL
      F7HQ83, U3C0T4

    3. XM_054248515.1 → XP_054104490.1  E3 ubiquitin-protein ligase ZNRF1 isoform X2

      UniProtKB/TrEMBL
      F7HQ83, U3C0T4

    4. XM_035281989.2 → XP_035137880.1  E3 ubiquitin-protein ligase ZNRF1 isoform X1

      Conserved Domains (1) summary
      cl17238
      Location:182 → 209
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    5. XM_035281990.2 → XP_035137881.1  E3 ubiquitin-protein ligase ZNRF1 isoform X3

      Conserved Domains (1) summary
      cl17238
      Location:76 → 103
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    6. XM_035281992.2 → XP_035137883.1  E3 ubiquitin-protein ligase ZNRF1 isoform X4

      Conserved Domains (1) summary
      cl17238
      Location:45 → 72
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    7. XM_054248517.1 → XP_054104492.1  E3 ubiquitin-protein ligase ZNRF1 isoform X4

    Nucleotide Protein
    Heading Accession and Version

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