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    sec23ip.L SEC23 interacting protein L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 447234, updated on 4-Nov-2024

    Summary

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    Official Symbol
    sec23ip.L
    Official Full Name
    SEC23 interacting protein L homeolog
    Primary source
    Xenbase:XB-GENE-17345511
    Locus tag
    XELAEV_18034295mg
    See related
    EnsemblRapid:ENSXLAG00005035768 AllianceGenome:Xenbase:XB-GENE-17345511
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Summary
    Predicted to enable metal ion binding activity and phospholipase activity. Predicted to act upstream of or within endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in COPII-coated ER to Golgi transport vesicle. Orthologous to human SEC23IP (SEC23 interacting protein). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See sec23ip.L in Genome Data Viewer
    Location:
    chromosome: 7L
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7L NC_054383.1 (4873858..4904199, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7L NC_030736.1 (4895816..4926268, complement)

    Chromosome 7L - NC_054383.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA19 Neighboring gene small nucleolar RNA SNORA19 Neighboring gene eukaryotic translation initiation factor 3 subunit A L homeolog Neighboring gene minichromosome maintenance complex binding protein L homeolog Neighboring gene inositol polyphosphate-5-phosphatase F L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC84165

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phospholipase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in COPII-coated ER to Golgi transport vesicle IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    SEC23 interacting protein L homeolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001093941.1 → NP_001087410.1  SEC23 interacting protein L homeolog

      See identical proteins and their annotated locations for NP_001087410.1

      Status: PROVISIONAL

      Source sequence(s)
      BC079740
      UniProtKB/TrEMBL
      A0A974CER3, Q68FK2
      Related
      ENSXLAP00005107383.1, ENSXLAT00005109510.1
      Conserved Domains (4) summary
      cd09584
      Location:641 → 707
      SAM_sec23ip; SAM domain of sec23ip
      smart00454
      Location:646 → 704
      SAM; Sterile alpha motif
      pfam02862
      Location:790 → 995
      DDHD; DDHD domain
      cl02729
      Location:269 → 325
      WWE; WWE domain

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054383.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      4873858..4904199 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041568537.1 → XP_041424471.1  SEC23 interacting protein L homeolog isoform X1

      UniProtKB/TrEMBL
      A0A8J1L4J8, A0A974CER3
      Conserved Domains (1) summary
      cd09584
      Location:637 → 703
      SAM_sec23ip; SAM domain of sec23ip
    Nucleotide Protein Strain
    Heading Accession and Version

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