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    cd82.S CD82 molecule S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 444244, updated on 17-Aug-2024

    Summary

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    Official Symbol
    cd82.S
    Official Full Name
    CD82 molecule S homeolog
    Primary source
    Xenbase:XB-GENE-945248
    Locus tag
    XELAEV_18024520mg
    See related
    EnsemblRapid:ENSXLAG00005023133
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    cd82
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    Genomic context

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    Location:
    chromosome: 4S
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (16255046..16282502)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (15663737..15691054)

    Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene exostosin glycosyltransferase 2 S homeolog Neighboring gene ALX homeobox 4 S homeolog Neighboring gene tetraspanin 18 S homeolog Neighboring gene tumor protein p53 inducible protein 11 S homeolog Neighboring gene uncharacterized LOC108715265

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC80828

    Gene Ontology Provided by Xenbase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    CD82 molecule S homeolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001092348.1 → NP_001085817.1  CD82 molecule S homeolog

      See identical proteins and their annotated locations for NP_001085817.1

      Status: PROVISIONAL

      Source sequence(s)
      BC073387
      UniProtKB/TrEMBL
      A0A974CZ40, Q6GNW4
      Related
      ENSXLAP00005068259.1, ENSXLAT00005069793.1
      Conserved Domains (2) summary
      cd03160
      Location:107 → 217
      CD37_CD82_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), CD37_CD82_Like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
      pfam00335
      Location:25 → 244
      Tetraspannin; Tetraspanin family

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      16255046..16282502
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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