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    LOC101408870 protein CASP [ Ceratotherium simum simum (southern white rhinoceros) ]

    Gene ID: 101408870, updated on 2-Nov-2023

    Summary

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    Gene symbol
    LOC101408870
    Gene description
    protein CASP
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ceratotherium simum simum (sub-species: simum)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Rhinocerotidae; Ceratotherium
    Also known as
    CUX1
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    Genomic context

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    See LOC101408870 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    101 current CerSimSim1.0 (GCF_000283155.1) Unplaced Scaffold NW_004454273.1 (2485066..2853345, complement)

    NW_004454273.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106803808 Neighboring gene PRKR interacting protein 1 Neighboring gene SH2B adaptor protein 2 Neighboring gene uncharacterized LOC106803806 Neighboring gene translation initiation factor IF-2-like Neighboring gene myosin light chain 10

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004454273.1 Unplaced Scaffold Reference CerSimSim1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in intra-Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein CASP
    Names
    cut-like homeobox 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ceratotherium simum simum Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CerSimSim1.0 Primary Assembly

    Genomic

    1. NW_004454273.1 Reference CerSimSim1.0 Primary Assembly

      Range
      2485066..2853345 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004442146.2 → XP_004442203.1  protein CASP isoform X1

      Conserved Domains (3) summary
      pfam00901
      Location:86 → 361
      Orbi_VP5; Orbivirus outer capsid protein VP5
      pfam08172
      Location:423 → 638
      CASP_C; CASP C terminal
      pfam13851
      Location:131 → 352
      GAS; Growth-arrest specific micro-tubule binding

    2. XM_004442148.2 → XP_004442205.2  protein CASP isoform X2

      Conserved Domains (4) summary
      pfam07851
      Location:305 → 380
      TMPIT; TMPIT-like protein
      pfam08172
      Location:421 → 636
      CASP_C; CASP C terminal
      pfam13851
      Location:131 → 350
      GAS; Growth-arrest specific micro-tubule binding
      pfam15290
      Location:146 → 289
      Syntaphilin; Golgi-localized syntaxin-1-binding clamp
    Nucleotide Protein
    Heading Accession and Version

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