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    LOC131070115 basic endochitinase [ Cryptomeria japonica (Japanese cedar) ]

    Gene ID: 131070115, updated on 23-Oct-2023

    Summary

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    Gene symbol
    LOC131070115
    Gene description
    basic endochitinase
    Locus tag
    SUGI_0024620
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cryptomeria japonica
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Pinopsida; Pinidae; Conifers II; Cupressales; Cupressaceae; Cryptomeria
    Also known as
    Chi1; CC1798
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    Genomic context

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    See LOC131070115 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_08 current Sugi_1.0 (GCF_030272615.1) 1 NC_081405.1 (189517910..189519316, complement)
    RS_2023_06 previous assembly CJA_r1.0 (GCF_027924625.1) Unplaced Scaffold NW_026649008.1 (1260995..1262399, complement)

    Chromosome 1 - NC_081405.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC131070152 Neighboring gene endochitinase Neighboring gene endochitinase Neighboring gene mitogen-activated protein kinase 4b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of novel putative causative genes and genetic marker for male sterility in Japanese cedar (Cryptomeria japonica D.Don). Mishima K, et al. BMC Genomics, 2018 Apr 23. PMID 29685102, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables chitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell wall macromolecule catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chitin catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in defense response to fungus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    basic endochitinase
    Names
    chitinase class I
    putative class I chitinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030272615.1-RS_2023_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sugi_1.0 Primary Assembly

    Genomic

    1. NC_081405.1 Reference Sugi_1.0 Primary Assembly

      Range
      189517910..189519316 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_058005634.2 → XP_057861617.1  basic endochitinase

    Nucleotide Protein
    Heading Accession and Version