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    tpm3.S tropomyosin 3 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 398952, updated on 18-Sep-2024

    Summary

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    Official Symbol
    tpm3.S
    Official Full Name
    tropomyosin 3 S homeolog
    Primary source
    Xenbase:XB-GENE-17331494
    Locus tag
    XELAEV_18042934mg
    See related
    EnsemblRapid:ENSXLAG00005007657
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    tm3; cegl11
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    Genomic context

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    See tpm3.S in Genome Data Viewer
    Location:
    chromosome: 8S
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8S NC_054386.1 (102204208..102231852)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8S NC_030739.1 (97213710..97241296)

    Chromosome 8S - NC_054386.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin/ISG15 ligase TRIM25 Neighboring gene ubiquitin associated protein 2 like S homeolog Neighboring gene chromosome 8 C1orf43 homolog S homeolog Neighboring gene ribosomal protein S27 S homeolog Neighboring gene jumping translocation breakpoint S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An atlas of differential gene expression during early Xenopus embryogenesis. Pollet N, et al. Mech Dev, 2005 Mar. PMID 15763213
    2. Axeldb: a Xenopus laevis database focusing on gene expression. Pollet N, et al. Nucleic Acids Res, 2000 Jan 1. PMID 10592204, Free PMC Article
    3. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC68479

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables actin binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within actin filament organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within muscle contraction IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in actin filament IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC398952

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001090016.1 → NP_001083485.1  uncharacterized protein LOC398952

      See identical proteins and their annotated locations for NP_001083485.1

      Status: PREDICTED

      Source sequence(s)
      BC060447
      UniProtKB/TrEMBL
      A0A974C4W1, Q6PA57
      Related
      ENSXLAP00005022066.1, ENSXLAT00005022757.1
      Conserved Domains (1) summary
      pfam00261
      Location:9 → 243
      Tropomyosin; Tropomyosin

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      102204208..102231852
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041574137.1 → XP_041430071.1  uncharacterized protein LOC398952 isoform X1

      UniProtKB/TrEMBL
      A0A8J1LLE5
      Conserved Domains (1) summary
      COG1196
      Location:9 → 255
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    2. XM_041574142.1 → XP_041430076.1  uncharacterized protein LOC398952 isoform X6

      UniProtKB/TrEMBL
      A0A8J1LLF2
      Related
      ENSXLAP00005022070.1, ENSXLAT00005022761.1
      Conserved Domains (1) summary
      COG1196
      Location:9 → 249
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    3. XM_041574138.1 → XP_041430072.1  uncharacterized protein LOC398952 isoform X2

      UniProtKB/TrEMBL
      A0A8J1LKM4, A0A974C4W1
      Related
      ENSXLAP00005022083.1, ENSXLAT00005022774.1
      Conserved Domains (1) summary
      TIGR02168
      Location:7 → 247
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    4. XM_041574139.1 → XP_041430073.1  uncharacterized protein LOC398952 isoform X3

      UniProtKB/TrEMBL
      A0A8J1LKG7
      Conserved Domains (1) summary
      TIGR02168
      Location:9 → 250
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    5. XM_041574141.1 → XP_041430075.1  uncharacterized protein LOC398952 isoform X5

      UniProtKB/TrEMBL
      A0A8J1LMY3
      Related
      ENSXLAP00005022076.1, ENSXLAT00005022767.1
      Conserved Domains (1) summary
      TIGR02168
      Location:7 → 226
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    6. XM_041574140.1 → XP_041430074.1  uncharacterized protein LOC398952 isoform X4

      UniProtKB/TrEMBL
      A0A8J1LLQ1, A0A974C4W1
      Conserved Domains (1) summary
      TIGR02168
      Location:7 → 225
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    Nucleotide Protein Strain
    Heading Accession and Version

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