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    LOC107932458 actin [ Gossypium hirsutum (cotton) ]

    Gene ID: 107932458, updated on 12-Aug-2024

    Summary

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    Gene symbol
    LOC107932458
    Gene description
    actin
    Locus tag
    ERO13_D08G011300v2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gossypium hirsutum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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    Genomic context

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    See LOC107932458 in Genome Data Viewer
    Location:
    chromosome: D08
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current Gossypium_hirsutum_v2.1 (GCF_007990345.1) D08 NC_053444.1 (315799..318592)

    Chromosome D08 - NC_053444.1Genomic Context describing neighboring genes Neighboring gene transfer RNA histidin (anticodon GUG) Neighboring gene dof zinc finger protein DOF2.2 Neighboring gene triosephosphate isomerase, cytosolic Neighboring gene scarecrow-like protein 14 Neighboring gene uncharacterized protein C24B11.05

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_053444.1 Chromosome D08 Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    actin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_007990345.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Genomic

    1. NC_053444.1 Reference Gossypium_hirsutum_v2.1 Primary Assembly

      Range
      315799..318592
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016864445.2 → XP_016719934.1  actin

      UniProtKB/Swiss-Prot
      O81221
      UniProtKB/TrEMBL
      A0A1U8HGP0, A0A1U8M316
      Conserved Domains (1) summary
      cl17037
      Location:5 → 377
      NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O81221.1 GenPept UniProtKB/Swiss-Prot:O81221

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