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    LOC100790824 transcription factor bHLH25-like [ Glycine max (soybean) ]

    Gene ID: 100790824, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100790824
    Gene description
    transcription factor bHLH25-like
    Locus tag
    GLYMA_15G061400v4
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
    Also known as
    SAT1; nodulin
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    Genomic context

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    See LOC100790824 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 15 NC_038251.2 (4718241..4721545)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 15 NC_038251.1 (4731571..4734875)

    Chromosome 15 - NC_038251.2Genomic Context describing neighboring genes Neighboring gene peptide methionine sulfoxide reductase B5 Neighboring gene probable sphingolipid transporter spinster homolog 2 Neighboring gene soluble inorganic pyrophosphatase 1, chloroplastic-like Neighboring gene uncharacterized LOC100791353 Neighboring gene transfer RNA valine (anticodon AAC)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of an ammonium transport protein from the peribacteroid membrane of soybean nodules. Kaiser BN, et al. Science, 1998 Aug 21. PMID 9712587
    2. Soybean SAT1 (Symbiotic Ammonium Transporter 1) encodes a bHLH transcription factor involved in nodule growth and NH4+ transport. Chiasson DM, et al. Proc Natl Acad Sci U S A, 2014 Apr 1. PMID 24707045, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. GmbHLHm1 influences nodule development and activity and is linked to a novel mechanism for NH4(+) transport common to both yeast and plants.
      Title: Soybean SAT1 (Symbiotic Ammonium Transporter 1) encodes a bHLH transcription factor involved in nodule growth and NH4+ transport.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor bHLH25-like
    Names
    symbiotic ammonium transporter

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001252914.1 → NP_001239843.1  transcription factor bHLH25-like

      See identical proteins and their annotated locations for NP_001239843.1

      Status: PROVISIONAL

      Source sequence(s)
      AF069738
      UniProtKB/TrEMBL
      O81348
      Conserved Domains (1) summary
      cd11452
      Location:171 → 243
      bHLH_AtNAI1_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein NAI1 and similar proteins

    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038251.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      4718241..4721545
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006596958.4 → XP_006597021.1  transcription factor bHLH25-like isoform X1

      UniProtKB/TrEMBL
      I1ME41
      Conserved Domains (1) summary
      cd11452
      Location:193 → 265
      bHLH_AtNAI1_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein NAI1 and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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