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    Tsp_08923 ubiquitin-conjugating enzyme E2 [ Trichinella spiralis ]

    Gene ID: 10902468, updated on 25-Jan-2024

    Summary

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    Gene symbol
    Tsp_08923
    Gene description
    ubiquitin-conjugating enzyme E2
    Locus tag
    Tsp_08923
    Gene type
    protein coding
    RNA name
    ubiquitin-conjugating enzyme E2
    RefSeq status
    PROVISIONAL
    Organism
    Trichinella spiralis (strain: ISS 195)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Trichocephalida; Trichinellidae; Trichinella
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    Genomic context

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    Location:
    chromosome: Unknown
    Exon count:
    6

    NW_003526940.1Genomic Context describing neighboring genes Neighboring gene putative COP9 signalosome complex subunit 1 Neighboring gene ParA family protein Neighboring gene deoxyribonuclease II family protein Neighboring gene DNA-directed RNA polymerase III subunit RPC2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003526940.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The draft genome of the parasitic nematode Trichinella spiralis. Mitreva M, et al. Nat Genet, 2011 Mar. PMID 21336279, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin conjugating enzyme activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein polyubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of HULC complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    ubiquitin-conjugating enzyme E2

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_003526940.1 Reference assembly

      Range
      2417328..2419461 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003382018.1 → XP_003382066.1  ubiquitin-conjugating enzyme E2 [Trichinella spiralis]

      See identical proteins and their annotated locations for XP_003382066.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      E5S003
      Conserved Domains (2) summary
      COG5078
      Location:123 → 258
      COG5078; Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
      pfam00179
      Location:122 → 252
      UQ_con; Ubiquitin-conjugating enzyme
    Nucleotide Protein
    Heading Accession and Version

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