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    LOC105144008 protein crooked neck-like [ Acromyrmex echinatior (Panamanian leafcutter ant) ]

    Gene ID: 105144008, updated on 22-Oct-2023

    Summary

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    Gene symbol
    LOC105144008
    Gene description
    protein crooked neck-like
    Locus tag
    G5I_00033
    See related
    EnsemblRapid:LOC105144008
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Acromyrmex echinatior
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Myrmicinae; Acromyrmex
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    See LOC105144008 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    100 current Aech_3.9 (GCF_000204515.1) Unplaced Scaffold NW_011626343.1 (7..2617, complement)

    NW_011626343.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_011626343.1 Unplaced Scaffold Reference Aech_3.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spliceosomal complex assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Prp19 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2-type catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of post-mRNA release spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein crooked neck-like
    Names
    Protein crooked neck

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Acromyrmex echinatior Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Aech_3.9

    Genomic

    1. NW_011626343.1 Reference Aech_3.9

      Range
      7..2617 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011052664.1 → XP_011050966.1  protein crooked neck-like

      UniProtKB/TrEMBL
      F4W3T4
      Related
      XP_011050966.1, XM_011052664.1
      Conserved Domains (4) summary
      pfam02184
      Location:191 → 222
      HAT; HAT (Half-A-TPR) repeat
      smart00386
      Location:90 → 122
      HAT; HAT (Half-A-TPR) repeats
      sd00006
      Location:79 → 104
      TPR; TPR repeat [structural motif]
      cl07066
      Location:309 → 385
      Mad3_BUB1_I; Mad3/BUB1 homology region 1
    Nucleotide Protein
    Heading Accession and Version

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