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    LOC4327325 uncharacterized LOC4327325 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327325, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327325
    Gene description
    uncharacterized LOC4327325
    Locus tag
    OSNPB_010196300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4327325 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (5210946..5213079)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (5201837..5203986)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene putative transcription factor bHLH041 Neighboring gene uncharacterized LOC107280684 Neighboring gene uncharacterized LOC9268356 Neighboring gene PRA1 family protein F3 Neighboring gene uncharacterized LOC4327327

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Yilmaz A, et al. Plant Physiol, 2009 Jan. PMID 18987217, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4327325
    Names
    Os01g0196300
    P0498B01.36
    bHLH transcription factor
    basic helix-loop-helix protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      5210946..5213079
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771425.3 → XP_015626911.1  uncharacterized protein LOC4327325

      UniProtKB/TrEMBL
      A0A0P0V027, B8ADQ8, Q5SMX4
      Conserved Domains (1) summary
      cd11393
      Location:255 → 307
      bHLH_AtbHLH_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana genes coding transcription factors and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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