U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    LOC123451926 protein indeterminate-domain 5, chloroplastic-like [ Hordeum vulgare subsp. vulgare (domesticated barley) ]

    Gene ID: 123451926, updated on 30-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC123451926
    Gene description
    protein indeterminate-domain 5, chloroplastic-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Hordeum vulgare subsp. vulgare (sub-species: vulgare)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC123451926 in Genome Data Viewer
    Location:
    chromosome: 5H
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    100 current MorexV3_pseudomolecules_assembly (GCF_904849725.1) 5H NC_058522.1 (513141670..513148916)

    Chromosome 5H - NC_058522.1Genomic Context describing neighboring genes Neighboring gene actin-related protein 4-like Neighboring gene receptor kinase-like protein Xa21 Neighboring gene protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 Neighboring gene phytoene synthase 2, chloroplastic-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_058522.1 Chromosome 5H Reference MorexV3_pseudomolecules_assembly Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Comprehensive sequence analysis of 24,783 barley full-length cDNAs derived from 12 clone libraries. Matsumoto T, et al. Plant Physiol, 2011 May. PMID 21415278, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein indeterminate-domain 5, chloroplastic-like
    Names
    predicted protein

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Hordeum vulgare subsp. vulgare Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MorexV3_pseudomolecules_assembly Primary Assembly

    Genomic

    1. NC_058522.1 Reference MorexV3_pseudomolecules_assembly Primary Assembly

      Range
      513141670..513148916
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_045128487.1 → XP_044984422.1  protein indeterminate-domain 5, chloroplastic-like

      UniProtKB/TrEMBL
      F2CSG0
      Conserved Domains (2) summary
      sd00017
      Location:68 → 88
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:66 → 88
      zf-C2H2; Zinc finger, C2H2 type

    2. XM_045128485.1 → XP_044984420.1  protein indeterminate-domain 5, chloroplastic-like

      UniProtKB/TrEMBL
      F2CSG0
      Conserved Domains (2) summary
      sd00017
      Location:68 → 88
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:66 → 88
      zf-C2H2; Zinc finger, C2H2 type

    3. XM_045128484.1 → XP_044984419.1  protein indeterminate-domain 5, chloroplastic-like

      UniProtKB/TrEMBL
      F2CSG0
      Conserved Domains (2) summary
      sd00017
      Location:68 → 88
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:66 → 88
      zf-C2H2; Zinc finger, C2H2 type

    4. XM_045128488.1 → XP_044984423.1  protein indeterminate-domain 5, chloroplastic-like

      UniProtKB/TrEMBL
      F2CSG0
      Conserved Domains (2) summary
      sd00017
      Location:68 → 88
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:66 → 88
      zf-C2H2; Zinc finger, C2H2 type
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases