U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    Cep57 centrosomal protein 57 [ Mus musculus (house mouse) ]

    Gene ID: 74360, updated on 28-Oct-2024

    Summary

    Official Symbol
    Cep57provided by MGI
    Official Full Name
    centrosomal protein 57provided by MGI
    Primary source
    MGI:MGI:1915551
    See related
    Ensembl:ENSMUSG00000031922 AllianceGenome:MGI:1915551
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Tsp57; mKIAA0092; 3110002L15Rik; 4921510P06Rik; 4931428M20Rik
    Summary
    Enables microtubule binding activity. Involved in protein homooligomerization and spermatid development. Located in centrosome; cytoplasm; and nucleus. Is expressed in midbrain ventricular layer and telencephalon ventricular layer. Human ortholog(s) of this gene implicated in mosaic variegated aneuploidy syndrome 2. Orthologous to human CEP57 (centrosomal protein 57). [provided by Alliance of Genome Resources, Oct 2024]
    Expression
    Broad expression in testis adult (RPKM 23.6), CNS E11.5 (RPKM 13.8) and 23 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Cep57 in Genome Data Viewer
    Location:
    9 A1; 9 3.49 cM
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (13717979..13738698, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (13807783..13827407, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 39291 Neighboring gene predicted gene, 53498 Neighboring gene myotubularin related protein 2 Neighboring gene STARR-seq mESC enhancer starr_23340 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:13631030-13631139 Neighboring gene STARR-positive B cell enhancer ABC_E3815 Neighboring gene STARR-positive B cell enhancer ABC_E363 Neighboring gene family with sequence similarity 76, member B Neighboring gene peptidylprolyl isomerase B pseudogene Neighboring gene STARR-seq mESC enhancer starr_23341 Neighboring gene RIKEN cDNA 1700019J19 gene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables fibroblast growth factor binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables fibroblast growth factor binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    enables gamma-tubulin binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables microtubule binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables microtubule binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein homodimerization activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein homodimerization activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in fibroblast growth factor receptor signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in fibroblast growth factor receptor signaling pathway ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    involved_in protein homooligomerization IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    involved_in spermatid development IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in centriolar satellite IEA
    Inferred from Electronic Annotation
    more info
     
    located_in centriolar satellite ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in centrosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in centrosome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in centrosome ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in microtubule ISO
    Inferred from Sequence Orthology
    more info
     
    located_in microtubule ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    centrosomal protein of 57 kDa
    Names
    testis-specific protein 57
    translokin

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001310721.1NP_001297650.1  centrosomal protein of 57 kDa isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an alternate in-frame exon compared to variant 1. It encodes isoform 2, which is shorter than isoform 1.
      Source sequence(s)
      AK019414, AK028408, AK028458, AK129053, CT010488
      Consensus CDS
      CCDS80955.1
      UniProtKB/TrEMBL
      A0PJD7, B8JJE7
      Related
      ENSMUSP00000116931.2, ENSMUST00000147115.8
      Conserved Domains (2) summary
      pfam06657
      Location:323393
      Cep57_MT_bd; Centrosome microtubule-binding domain of Cep57
      pfam14073
      Location:68245
      Cep57_CLD; Centrosome localization domain of Cep57
    2. NM_026665.4NP_080941.3  centrosomal protein of 57 kDa isoform 1

      See identical proteins and their annotated locations for NP_080941.3

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      AK028458, AK129053, BB846596, BC050785
      Consensus CDS
      CCDS52724.1
      UniProtKB/Swiss-Prot
      B8JJE6, Q6ZQJ3, Q7TN18, Q80X65, Q810F2, Q8CEE0, Q9D4J4, Q9D5S4, Q9D5W5
      UniProtKB/TrEMBL
      A0PJD7
      Related
      ENSMUSP00000034398.6, ENSMUST00000034398.12
      Conserved Domains (2) summary
      pfam06657
      Location:349419
      Cep57_MT_bd; Centrosome microtubule-binding domain of Cep57
      pfam14073
      Location:68245
      Cep57_CLD; Centrosome localization domain of Cep57

    RNA

    1. NR_037622.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses a different splice site and is represented as non-coding due to the presence of an upstream ORF that is predicted to interfere with translation of the longest ORF; translation of the upstream ORF renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
      Source sequence(s)
      AK016484, AK028458, BC030353

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      13717979..13738698 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006510649.3XP_006510712.1  centrosomal protein of 57 kDa isoform X2

      See identical proteins and their annotated locations for XP_006510712.1

      UniProtKB/TrEMBL
      B8JJF0
      Conserved Domains (2) summary
      pfam06657
      Location:200271
      Cep57_MT_bd; Centrosome microtubule-binding domain of Cep57
      pfam14073
      Location:196
      Cep57_CLD; Centrosome localization domain of Cep57
    2. XM_030244681.2XP_030100541.1  centrosomal protein of 57 kDa isoform X2

      UniProtKB/TrEMBL
      B8JJF0
      Related
      ENSMUSP00000119081.2, ENSMUST00000124883.8
      Conserved Domains (2) summary
      pfam06657
      Location:200271
      Cep57_MT_bd; Centrosome microtubule-binding domain of Cep57
      pfam14073
      Location:196
      Cep57_CLD; Centrosome localization domain of Cep57
    3. XM_017313667.3XP_017169156.1  centrosomal protein of 57 kDa isoform X1

      UniProtKB/TrEMBL
      A0PJD7
      Conserved Domains (2) summary
      pfam06657
      Location:296367
      Cep57_MT_bd; Centrosome microtubule-binding domain of Cep57
      pfam14073
      Location:41218
      Cep57_CLD; Centrosome localization domain of Cep57

    RNA

    1. XR_001779042.3 RNA Sequence

      Related
      ENSMUST00000142494.8