ubtf.S upstream binding transcription factor S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: ubtf.S
Official Full Name: upstream binding transcription factor S homeolog
Primary source: Xenbase:XB-GENE-966569
Locus tag: XELAEV_18046049mg
See related: EnsemblRapid:ENSXLAG00005033458
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: ubf; ubf1; ubf2; ubtf; xUBF; ubtf-a; ubtf-b; xUBFbeta2
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Genomic context

Location:: chromosome: 9_10S

Exon count:: 22

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	9_10S	NC_054388.1 (4851041..4872102)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	9_10S	NC_030741.1 (4710554..4731184)

Chromosome 9_10S - NC_054388.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within positive regulation of transcription by RNA polymerase I	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
located_in nucleolus	ISS Inferred from Sequence or Structural Similarity more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: nucleolar transcription factor 1-B

Names: UBF-1-B; upstream binding transcription factor, RNA polymerase I S homeolog; upstream-binding factor 1-B; xUBF-2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001085960.1 → NP_001079429.1 nucleolar transcription factor 1-B

Status: PROVISIONAL

Source sequence(s)

X59863

UniProtKB/Swiss-Prot

P25980

Conserved Domains (2) summary

cd01390
Location:112 → 177

HMGB-UBF_HMG-box; HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone ...

pfam14887
Location:419 → 502

HMG_box_5; HMG (high mobility group) box 5

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054388.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

4851041..4872102

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_018237170.2 → XP_018092659.1 nucleolar transcription factor 1-B isoform X1

UniProtKB/Swiss-Prot

P25980

UniProtKB/TrEMBL

A0A974BSX5, Q8AVJ8

Related

ENSXLAP00005100609.1, ENSXLAT00005102568.1
XM_018237171.2 → XP_018092660.1 nucleolar transcription factor 1-B isoform X1

UniProtKB/Swiss-Prot

P25980

UniProtKB/TrEMBL

A0A974BSX5, Q8AVJ8

Related

ENSXLAP00005100875.1, ENSXLAT00005102838.1
XM_018237169.2 → XP_018092658.1 nucleolar transcription factor 1-B isoform X1

UniProtKB/Swiss-Prot

P25980

UniProtKB/TrEMBL

A0A974BSX5, Q8AVJ8

Related

ENSXLAP00005100951.1, ENSXLAT00005102917.1
XM_041577617.1 → XP_041433551.1 nucleolar transcription factor 1-B isoform X2

UniProtKB/Swiss-Prot

P25980

UniProtKB/TrEMBL

A0A8J1LWW4

Related

ENSXLAP00005100679.1, ENSXLAT00005102638.1

Conserved Domains (2) summary

cd01390
Location:112 → 177

HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

pfam14887
Location:397 → 480

HMG_box_5; HMG (high mobility group) box 5