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    NTNG1 netrin G1 [ Columba livia (rock pigeon) ]

    Gene ID: 102094025, updated on 3-Aug-2024

    Summary

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    Gene symbol
    NTNG1
    Gene description
    netrin G1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Columba livia
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Columbimorphae; Columbiformes; Columbidae; Columba
    Also known as
    Netrin-G1
    Orthologs
    human mouse all
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    Genomic context

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    See NTNG1 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_05 current bColLiv1.pat.W.v2 (GCF_036013475.1) 8 NC_088609.1 (20183457..20339569, complement)
    102 previous assembly Cliv_1.0 (GCF_000337935.1) Unplaced Scaffold NW_004973192.1 (6030808..6185494)

    Chromosome 8 - NC_088609.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 member 24 Neighboring gene vav guanine nucleotide exchange factor 3 Neighboring gene uncharacterized LOC110362127 Neighboring gene uncharacterized LOC110362122 Neighboring gene uncharacterized LOC110362081 Neighboring gene uncharacterized LOC135580121 Neighboring gene uncharacterized LOC110361106

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genomic diversity and evolution of the head crest in the rock pigeon. Shapiro MD, et al. Science, 2013 Mar 1. PMID 23371554, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in animal organ morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in substrate adhesion-dependent cell spreading IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tissue development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in basement membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    netrin-G1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036013475.1-RS_2024_05

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bColLiv1.pat.W.v2

    Genomic

    1. NC_088609.1 Reference bColLiv1.pat.W.v2

      Range
      20183457..20339569 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_065072461.1 → XP_064928533.1  netrin-G1 isoform X3

    2. XM_065072458.1 → XP_064928530.1  netrin-G1 isoform X1

      UniProtKB/TrEMBL
      A0A2I0ME13

    3. XM_065072462.1 → XP_064928534.1  netrin-G1 isoform X4

    4. XM_065072464.1 → XP_064928536.1  netrin-G1 isoform X6

    5. XM_065072459.1 → XP_064928531.1  netrin-G1 isoform X2

    6. XM_065072463.1 → XP_064928535.1  netrin-G1 isoform X5

    7. XM_065072466.1 → XP_064928538.1  netrin-G1 isoform X8

    8. XM_065072465.1 → XP_064928537.1  netrin-G1 isoform X7

    9. XM_065072467.1 → XP_064928539.1  netrin-G1 isoform X9

    10. XM_065072468.1 → XP_064928540.1  netrin-G1 isoform X10

    11. XM_013368017.3 → XP_013223471.1  netrin-G1 isoform X1

      UniProtKB/TrEMBL
      A0A2I0ME13
      Conserved Domains (3) summary
      cd00054
      Location:517 → 541
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00055
      Location:462 → 506
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      pfam00055
      Location:71 → 295
      Laminin_N; Laminin N-terminal (Domain VI)
    Nucleotide Protein
    Heading Accession and Version

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