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    LOC135570213 T-cell-specific surface glycoprotein CD28-like [ Oncorhynchus nerka (sockeye salmon) ]

    Gene ID: 135570213, updated on 9-May-2024

    Summary

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    Gene symbol
    LOC135570213
    Gene description
    T-cell-specific surface glycoprotein CD28-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oncorhynchus nerka
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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    Genomic context

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    See LOC135570213 in Genome Data Viewer
    Location:
    chromosome: LG3
    Exon count:
    6
    Annotation release Status Assembly LG Location
    RS_2024_05 current Oner_Uvic_2.0 (GCF_034236695.1) LG3 NC_088398.1 (85513419..85618274, complement)

    Linkage Group LG3 - NC_088398.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC135563052 Neighboring gene cytotoxic T-lymphocyte protein 4-like Neighboring gene ras-associated and pleckstrin homology domains-containing protein 1-like Neighboring gene abl interactor 2-like Neighboring gene uncharacterized LOC135563584

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_088398.1 Chromosome LG3 Reference Oner_Uvic_2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in T cell receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of T cell proliferation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in external side of plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    T-cell-specific surface glycoprotein CD28-like; uncharacterized protein LOC135570213

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034236695.1-RS_2024_05

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Oner_Uvic_2.0 Primary Assembly

    Genomic

    1. NC_088398.1 Reference Oner_Uvic_2.0 Primary Assembly

      Range
      85513419..85618274 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_065016341.1 → XP_064872413.1  T-cell-specific surface glycoprotein CD28-like isoform X4

    2. XM_065016336.1 → XP_064872408.1  T-cell-specific surface glycoprotein CD28-like isoform X3

    3. XM_065016346.1 → XP_064872418.1  T-cell-specific surface glycoprotein CD28-like isoform X5

    4. XM_065016335.1 → XP_064872407.1  uncharacterized protein LOC135570213 isoform X2

    5. XM_065016330.1 → XP_064872402.1  uncharacterized protein LOC135570213 isoform X1

    Nucleotide Protein
    Heading Accession and Version