U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    nr1i2 nuclear receptor subfamily 1, group I, member 2 [ Oncorhynchus nerka (sockeye salmon) ]

    Gene ID: 115115748, updated on 8-May-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    nr1i2
    Gene description
    nuclear receptor subfamily 1, group I, member 2
    See related
    EnsemblRapid:ENSONEG00000026272
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oncorhynchus nerka
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
    Orthologs
    human zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See nr1i2 in Genome Data Viewer
    Location:
    chromosome: LG3
    Exon count:
    9
    Annotation release Status Assembly LG Location
    RS_2024_05 current Oner_Uvic_2.0 (GCF_034236695.1) LG3 NC_088398.1 (66123945..66142452, complement)
    100 previous assembly Oner_1.0 (GCF_006149115.1) Unplaced Scaffold NW_021784120.1 (201142..218738)

    Linkage Group LG3 - NC_088398.1Genomic Context describing neighboring genes Neighboring gene probable G-protein coupled receptor 156 Neighboring gene zinc finger protein RFP-like Neighboring gene glycogen synthase kinase-3 beta Neighboring gene cell surface glycoprotein CD200 receptor 1-A Neighboring gene B- and T-lymphocyte attenuator Neighboring gene OX-2 membrane glycoprotein-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nuclear receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    nuclear receptor subfamily 1 group I member 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034236695.1-RS_2024_05

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Oner_Uvic_2.0 Primary Assembly

    Genomic

    1. NC_088398.1 Reference Oner_Uvic_2.0 Primary Assembly

      Range
      66123945..66142452 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_029644234.2 → XP_029500094.1  nuclear receptor subfamily 1 group I member 2 isoform X1

      Conserved Domains (2) summary
      cd06934
      Location:126 → 450
      NR_LBD_PXR_like; The ligand binding domain of xenobiotic receptors:pregnane X receptor and constitutive androstane receptor
      cd07162
      Location:30 → 116
      NR_DBD_PXR; DNA-binding domain of pregnane X receptor (PXRs) is composed of two C4-type zinc fingers

    2. XM_029644233.2 → XP_029500093.1  nuclear receptor subfamily 1 group I member 2 isoform X1

      Related
      ENSONEP00000058312.1

    3. XM_029644235.2 → XP_029500095.1  nuclear receptor subfamily 1 group I member 2 isoform X2

      Conserved Domains (2) summary
      cd07162
      Location:30 → 116
      NR_DBD_PXR; DNA-binding domain of pregnane X receptor (PXRs) is composed of two C4-type zinc fingers
      cl11397
      Location:126 → 371
      NR_LBD; The ligand binding domain of nuclear receptors, a family of ligand-activated transcription regulators
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.