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    SOAT1 sterol O-acyltransferase 1 [ Phalacrocorax carbo (great cormorant) ]

    Gene ID: 104050189, updated on 3-Aug-2024

    Summary

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    Gene symbol
    SOAT1
    Gene description
    sterol O-acyltransferase 1
    Locus tag
    N336_01124
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Phalacrocorax carbo
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Suliformes; Phalacrocoracidae; Phalacrocorax
    Orthologs
    human mouse all
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    Genomic context

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    See SOAT1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_04 current bPhaCar2.1 (GCF_963921805.1) 6 NC_087518.1 (32537294..32570320)
    100 previous assembly ASM70892v1 (GCF_000708925.1) Unplaced Scaffold NW_009169507.1 (36946..62559, complement)

    Chromosome 6 - NC_087518.1Genomic Context describing neighboring genes Neighboring gene torsin family 3 member A Neighboring gene ABL proto-oncogene 2, non-receptor tyrosine kinase Neighboring gene axonemal dynein light chain domain containing 1 Neighboring gene NPHS2 stomatin family member, podocin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cholesterol O-acyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cholesterol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables fatty-acyl-CoA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cholesterol efflux IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cholesterol metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sterol O-acyltransferase 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_963921805.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bPhaCar2.1

    Genomic

    1. NC_087518.1 Reference bPhaCar2.1

      Range
      32537294..32570320
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_064454480.1 → XP_064310550.1  sterol O-acyltransferase 1 isoform X2

    2. XM_064454479.1 → XP_064310549.1  sterol O-acyltransferase 1 isoform X1

    3. XM_064454481.1 → XP_064310551.1  sterol O-acyltransferase 1 isoform X1

    4. XM_064454483.1 → XP_064310553.1  sterol O-acyltransferase 1 isoform X1

    5. XM_064454476.1 → XP_064310546.1  sterol O-acyltransferase 1 isoform X1

    6. XM_064454478.1 → XP_064310548.1  sterol O-acyltransferase 1 isoform X1

    7. XM_064454482.1 → XP_064310552.1  sterol O-acyltransferase 1 isoform X1

    8. XM_064454484.1 → XP_064310554.1  sterol O-acyltransferase 1 isoform X1

    Nucleotide Protein
    Heading Accession and Version

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