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    LOC100442808 chimeric ERCC6-PGBD3 protein [ Pongo abelii (Sumatran orangutan) ]

    Gene ID: 100442808, updated on 26-Mar-2024

    Summary

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    Gene symbol
    LOC100442808
    Gene description
    chimeric ERCC6-PGBD3 protein
    Locus tag
    CR201_G0048767
    See related
    Ensembl:ENSPPYG00000002254
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pongo abelii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
    Also known as
    ERCC6
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    Genomic context

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    See LOC100442808 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 8 NC_071993.2 (56015362..56099515, complement)
    RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 10 NC_071995.1 (52167488..52251017, complement)

    Chromosome 8 - NC_071993.2Genomic Context describing neighboring genes Neighboring gene chromosome 8 C10orf71 homolog Neighboring gene dorsal root ganglia homeobox Neighboring gene uncharacterized LOC134762042 Neighboring gene solute carrier family 18 member A3 Neighboring gene choline O-acetyltransferase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transcription-coupled nucleotide-excision repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA excision repair protein ERCC-6; chimeric ERCC6-PGBD3 protein
    Names
    ERCC excision repair 6, chromatin remodeling factor
    excision repair cross-complementing rodent repair deficiency, complementation group 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Genomic

    1. NC_071993.2 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

      Range
      56015362..56099515 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063727562.1 → XP_063583632.1  DNA excision repair protein ERCC-6 isoform X2

    2. XM_024253937.3 → XP_024109705.3  DNA excision repair protein ERCC-6 isoform X1

    3. XM_054522318.2 → XP_054378293.2  DNA excision repair protein ERCC-6 isoform X2

    4. XM_024253936.3 → XP_024109704.3  DNA excision repair protein ERCC-6 isoform X1

    5. XM_063727563.1 → XP_063583633.1  DNA excision repair protein ERCC-6 isoform X2

    6. XM_054522317.2 → XP_054378292.2  DNA excision repair protein ERCC-6 isoform X1

    7. XM_054522319.2 → XP_054378294.2  chimeric ERCC6-PGBD3 protein isoform X3

    8. XM_024253939.3 → XP_024109707.3  chimeric ERCC6-PGBD3 protein isoform X3

    9. XM_063727564.1 → XP_063583634.1  chimeric ERCC6-PGBD3 protein isoform X3

    Nucleotide Protein
    Heading Accession and Version

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