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    LOC100447677 melanoma antigen preferentially expressed in tumors [ Pongo abelii (Sumatran orangutan) ]

    Gene ID: 100447677, updated on 3-Apr-2024

    Summary

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    Gene symbol
    LOC100447677
    Gene description
    melanoma antigen preferentially expressed in tumors
    Locus tag
    CR201_G0047492
    See related
    Ensembl:ENSPPYG00000011614
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pongo abelii
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pongo
    Also known as
    PRAME
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    Genomic context

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    See LOC100447677 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPonAbe1-v2.0_pri (GCF_028885655.2) 23 NC_085929.1 (25950665..25962329)
    RS_2023_04 previous assembly NHGRI_mPonAbe1-v1.1-hic.freeze_pri (GCF_028885655.1) 22 NC_072007.1 (5084876..5096368)

    Chromosome 23 - NC_085929.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129052519 Neighboring gene probable non-functional immunoglobulin lambda variable 2-33 Neighboring gene uncharacterized LOC103888937 Neighboring gene uncharacterized LOC129052521 Neighboring gene uncharacterized LOC134761153 Neighboring gene small nucleolar RNA U13 Neighboring gene zinc finger protein 280A Neighboring gene zinc finger protein 280B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nuclear retinoic acid receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of cell population proliferation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    melanoma antigen preferentially expressed in tumors
    Names
    preferentially expressed antigen in melanoma

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028885655.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

    Genomic

    1. NC_085929.1 Reference NHGRI_mPonAbe1-v2.0_pri Primary Assembly

      Range
      25950665..25962329
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054543071.2 → XP_054399046.2  melanoma antigen preferentially expressed in tumors isoform X1

      UniProtKB/TrEMBL
      A0A2J8RZ57, H2P3Q9

    2. XM_063722762.1 → XP_063578832.1  melanoma antigen preferentially expressed in tumors isoform X1

      UniProtKB/TrEMBL
      A0A2J8RZ57, H2P3Q9

    3. XM_054543066.2 → XP_054399041.2  melanoma antigen preferentially expressed in tumors isoform X1

      UniProtKB/TrEMBL
      A0A2J8RZ57, H2P3Q9

    4. XM_054543073.2 → XP_054399048.2  melanoma antigen preferentially expressed in tumors isoform X1

      UniProtKB/TrEMBL
      A0A2J8RZ57, H2P3Q9

    5. XM_054543067.2 → XP_054399042.2  melanoma antigen preferentially expressed in tumors isoform X1

      UniProtKB/TrEMBL
      A0A2J8RZ57, H2P3Q9

    6. XM_063722763.1 → XP_063578833.1  melanoma antigen preferentially expressed in tumors isoform X1

      UniProtKB/TrEMBL
      A0A2J8RZ57, H2P3Q9

    7. XM_054543069.2 → XP_054399044.2  melanoma antigen preferentially expressed in tumors isoform X1

      UniProtKB/TrEMBL
      A0A2J8RZ57, H2P3Q9

    8. XM_054543074.2 → XP_054399049.2  melanoma antigen preferentially expressed in tumors isoform X1

      UniProtKB/TrEMBL
      A0A2J8RZ57, H2P3Q9

    9. XM_054543070.2 → XP_054399045.2  melanoma antigen preferentially expressed in tumors isoform X1

      UniProtKB/TrEMBL
      A0A2J8RZ57, H2P3Q9

    10. XM_054543075.2 → XP_054399050.2  melanoma antigen preferentially expressed in tumors isoform X2

      UniProtKB/TrEMBL
      A0A8I5YKE1

    11. XM_054543076.2 → XP_054399051.2  melanoma antigen preferentially expressed in tumors isoform X2

      UniProtKB/TrEMBL
      A0A8I5YKE1
    Nucleotide Protein
    Heading Accession and Version

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