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    Ankrd29 ankyrin repeat domain 29 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498823, updated on 2-Nov-2024

    Summary

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    Symbol
    Ankrd29provided by RGD
    Full Name
    ankyrin repeat domain 29provided by RGD
    Primary source
    RGD:1587260
    See related
    EnsemblRapid:ENSRNOG00000046744 AllianceGenome:RGD:1587260
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human ANKRD29 (ankyrin repeat domain 29). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Brain (RPKM 50.4), Lung (RPKM 37.6) and 4 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ankrd29 in Genome Data Viewer
    Location:
    18p13
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 18 NC_086036.1 (3711052..3768997, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 18 NC_051353.1 (3436301..3494292, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 18 NC_005117.4 (3673915..3676187, complement)

    Chromosome 18 - NC_086036.1Genomic Context describing neighboring genes Neighboring gene regulator of MON1-CCZ1 Neighboring gene NPC intracellular cholesterol transporter 1 Neighboring gene AKT interacting protein, pseudogene 1 Neighboring gene laminin subunit alpha 3 Neighboring gene uncharacterized LOC134482906 Neighboring gene uncharacterized LOC120098332

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    ankyrin repeat domain-containing protein 29
    Names
    ankyrin repeat domain-containing protein 29-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001190372.2 → NP_001177301.1  ankyrin repeat domain-containing protein 29

      Status: INFERRED

      Source sequence(s)
      JAXUCZ010000018
      UniProtKB/TrEMBL
      F1M3B1
      Related
      ENSRNOP00000087664.2, ENSRNOT00000115691.2
      Conserved Domains (3) summary
      PLN03192
      Location:38 → 171
      PLN03192; Voltage-dependent potassium channel; Provisional
      sd00045
      Location:78 → 109
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:182 → 273
      Ank_2; Ankyrin repeats (3 copies)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086036.1 Reference GRCr8

      Range
      3711052..3768997 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039097019.2 → XP_038952947.1  ankyrin repeat domain-containing protein 29 isoform X1

      UniProtKB/TrEMBL
      A0A8I6A693, F1M3B1
      Conserved Domains (4) summary
      sd00045
      Location:81 → 112
      ANK; ANK repeat [structural motif]
      pfam13637
      Location:150 → 201
      Ank_4; Ankyrin repeats (many copies)
      pfam12796
      Location:53 → 144
      Ank_2; Ankyrin repeats (3 copies)
      cl39094
      Location:14 → 78
      Ank_2; Ankyrin repeats (3 copies)

    2. XM_039097021.2 → XP_038952949.1  ankyrin repeat domain-containing protein 29 isoform X2

      UniProtKB/TrEMBL
      F1M3B1, M0RAA5
      Related
      ENSRNOP00000066450.2, ENSRNOT00000073811.3
      Conserved Domains (3) summary
      sd00045
      Location:41 → 72
      ANK; ANK repeat [structural motif]
      pfam13637
      Location:110 → 161
      Ank_4; Ankyrin repeats (many copies)
      pfam12796
      Location:13 → 104
      Ank_2; Ankyrin repeats (3 copies)

    3. XM_039097024.2 → XP_038952952.1  ankyrin repeat domain-containing protein 29 isoform X4

      Conserved Domains (2) summary
      sd00045
      Location:53 → 84
      ANK; ANK repeat [structural motif]
      cl39094
      Location:3 → 168
      Ank_2; Ankyrin repeats (3 copies)

    4. XM_039097025.2 → XP_038952953.1  ankyrin repeat domain-containing protein 29 isoform X4

      Conserved Domains (2) summary
      sd00045
      Location:53 → 84
      ANK; ANK repeat [structural motif]
      cl39094
      Location:3 → 168
      Ank_2; Ankyrin repeats (3 copies)

    5. XM_063277513.1 → XP_063133583.1  ankyrin repeat domain-containing protein 29 isoform X4

    6. XM_039097022.2 → XP_038952950.1  ankyrin repeat domain-containing protein 29 isoform X3

      Conserved Domains (2) summary
      sd00045
      Location:21 → 52
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:92 → 183
      Ank_2; Ankyrin repeats (3 copies)
    Nucleotide Protein Strain
    Heading Accession and Version

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