U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    tph1a tryptophan hydroxylase 1 (tryptophan 5-monooxygenase) a [ Trichomycterus rosablanca ]

    Gene ID: 134321589, updated on 29-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    tph1a
    Gene description
    tryptophan hydroxylase 1 (tryptophan 5-monooxygenase) a
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Trichomycterus rosablanca
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Trichomycteridae; Trichomycterus
    Orthologs
    human zebrafish all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See tph1a in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current fTriRos1.hap1 (GCF_030014385.1) 1 NC_085988.1 (44549691..44558601, complement)

    Chromosome 1 - NC_085988.1Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel, Shaw-related subfamily, member 1b Neighboring gene secretion regulating guanine nucleotide exchange factor Neighboring gene serum amyloid A-like 1 Neighboring gene Bet1 golgi vesicular membrane trafficking protein-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_085988.1 Chromosome 1 Reference fTriRos1.hap1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tryptophan 5-monooxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in aromatic amino acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in serotonin biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    tryptophan 5-hydroxylase 1a

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_030014385.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fTriRos1.hap1

    Genomic

    1. NC_085988.1 Reference fTriRos1.hap1

      Range
      44549691..44558601 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063003399.1 → XP_062859469.1  tryptophan 5-hydroxylase 1a

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.