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    plecb plectin b [ Cololabis saira (Pacific saury) ]

    Gene ID: 133425476, updated on 9-Jul-2024

    Summary

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    Gene symbol
    plecb
    Gene description
    plectin b
    See related
    EnsemblRapid:ENSLTZG00000024805
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cololabis saira
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Belonidae; Cololabis
    Orthologs
    zebrafish all
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    Genomic context

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    See plecb in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    41
    Annotation release Status Assembly Chr Location
    RS_2023_12 current fColSai1.1 (GCF_033807715.1) 3 NC_084589.1 (13431082..13576946)

    Chromosome 3 - NC_084589.1Genomic Context describing neighboring genes Neighboring gene hepcidin-like Neighboring gene hepcidin-like Neighboring gene microtubule actin crosslinking factor 1b Neighboring gene solute carrier family 52 member 3-2b

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_084589.1 Chromosome 3 Reference fColSai1.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ankyrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables cadherin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of muscle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in hemidesmosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intermediate filament cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in wound healing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in focal adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in hemidesmosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in intermediate filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in perinuclear region of cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in sarcolemma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plectin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_033807715.1-RS_2023_12

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fColSai1.1 Primary Assembly

    Genomic

    1. NC_084589.1 Reference fColSai1.1 Primary Assembly

      Range
      13431082..13576946
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_061716304.1 → XP_061572288.1  plectin isoform X3

    2. XM_061716305.1 → XP_061572289.1  plectin isoform X4

      Related
      ENSLTZP00000042102.1, ENSLTZT00000055128.1

    3. XM_061716309.1 → XP_061572293.1  plectin isoform X7

    4. XM_061716311.1 → XP_061572295.1  plectin isoform X9

      Related
      ENSLTZP00000042097.1, ENSLTZT00000055123.1

    5. XM_061716310.1 → XP_061572294.1  plectin isoform X8

    6. XM_061716302.1 → XP_061572286.1  plectin isoform X1

      Related
      ENSLTZP00000041659.1, ENSLTZT00000054685.1

    7. XM_061716303.1 → XP_061572287.1  plectin isoform X2

    8. XM_061716312.1 → XP_061572296.1  plectin isoform X10

      Related
      ENSLTZP00000042080.1, ENSLTZT00000055106.1

    9. XM_061716306.1 → XP_061572290.1  plectin isoform X5

    10. XM_061716308.1 → XP_061572292.1  plectin isoform X6

    11. XM_061716313.1 → XP_061572297.1  plectin isoform X11

    Nucleotide Protein
    Heading Accession and Version

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