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    LOC100252122 protein yippee-like At4g27740 [ Vitis vinifera (wine grape) ]

    Gene ID: 100252122, updated on 29-Sep-2023

    Summary

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    Gene symbol
    LOC100252122
    Gene description
    protein yippee-like At4g27740
    Locus tag
    VIT_00038595001
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Vitis vinifera
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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    Genomic context

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    See LOC100252122 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 16 NC_081820.1 (27160070..27161712)
    102 previous assembly 12X (GCF_000003745.3) 16 NC_012022.3 (21617861..21619619)

    Chromosome 16 - NC_081820.1Genomic Context describing neighboring genes Neighboring gene U-box domain-containing protein 43 Neighboring gene oligopeptide transporter 6 Neighboring gene RNA-binding protein 1 Neighboring gene protein yippee-like At4g27745 Neighboring gene uncharacterized LOC100241859 Neighboring gene pentatricopeptide repeat-containing protein At2g13600

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
    2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein yippee-like At4g27740

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3070453v1 Primary Assembly

    Genomic

    1. NC_081820.1 Reference ASM3070453v1 Primary Assembly

      Range
      27160070..27161712
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002275313.4 → XP_002275349.1  protein yippee-like At4g27740

      See identical proteins and their annotated locations for XP_002275349.1

      UniProtKB/TrEMBL
      E0CV85
      Conserved Domains (1) summary
      cl13152
      Location:11 → 103
      RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains

    2. XM_010664601.3 → XP_010662903.1  protein yippee-like At4g27740

      See identical proteins and their annotated locations for XP_010662903.1

      UniProtKB/TrEMBL
      E0CV85
      Conserved Domains (1) summary
      cl13152
      Location:11 → 103
      RLR_C_like; C-terminal domain of Retinoic acid-inducible gene (RIG)-I-like Receptors, Cereblon (CRBN), and similar protein domains
    Nucleotide Protein
    Heading Accession and Version

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