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    B3GAT3 beta-1,3-glucuronyltransferase 3 [ Alligator mississippiensis (American alligator) ]

    Gene ID: 102563043, updated on 8-May-2024

    Summary

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    Gene symbol
    B3GAT3
    Gene description
    beta-1,3-glucuronyltransferase 3
    Locus tag
    Y1Q_0017146
    See related
    EnsemblRapid:ENSAMIG00015005103
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Alligator mississippiensis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
    Orthologs
    human mouse all
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    Genomic context

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    See B3GAT3 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_09 current rAllMis1 (GCF_030867095.1) 15 NC_081838.1 (3215075..3218074)
    102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017711668.1 (5949..8972)

    Chromosome 15 - NC_081838.1Genomic Context describing neighboring genes Neighboring gene integrator complex subunit 5 Neighboring gene glucosidase II alpha subunit Neighboring gene transcriptional-regulating factor 1 Neighboring gene EMAP like 3 Neighboring gene metastasis associated 1 family member 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chondroitin sulfate proteoglycan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3
    Names
    beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rAllMis1 Primary Assembly

    Genomic

    1. NC_081838.1 Reference rAllMis1 Primary Assembly

      Range
      3215075..3218074
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_019494921.2 → XP_019350466.1  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3

      UniProtKB/TrEMBL
      A0A151N0T3

    2. XM_006270959.4 → XP_006271021.1  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 3

      UniProtKB/TrEMBL
      A0A151N0T3
      Related
      ENSAMIP00015006158.1, ENSAMIT00015009125.1
      Conserved Domains (1) summary
      cd00218
      Location:77 → 304
      GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis
    Nucleotide Protein
    Heading Accession and Version

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