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    LOC9269072 AP2-like ethylene-responsive transcription factor TOE3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9269072, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC9269072
    Gene description
    AP2-like ethylene-responsive transcription factor TOE3
    Locus tag
    OSNPB_040649100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    AP2-5; SHAT1
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    Genomic context

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    See LOC9269072 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (33587075..33590824)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (33071411..33075286)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene probable E3 ubiquitin-protein ligase HIP1 Neighboring gene ethylene-responsive transcription factor ERF008 Neighboring gene uncharacterized LOC107280524 Neighboring gene filament-like plant protein 7 Neighboring gene WUSCHEL-related homeobox 4-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    APETALA2-like protein 5
    Names
    AP2 domain-containing protein
    OSJNBa0010D21.13
    OSNPB_040649100
    Os04g0649100
    Protein SHATTERING ABORTION 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001424282.1 → NP_001411211.1  APETALA2-like protein 5

      Status: VALIDATED

      Source sequence(s)
      AK121346, CB649669, CB649737

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      33587075..33590824
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781362.3 → XP_015636848.1  APETALA2-like protein 5 isoform X1

      UniProtKB/Swiss-Prot
      A0A0N7KJT8, B8AVJ9, B9FCV0, Q7XT53
      Conserved Domains (2) summary
      smart00380
      Location:203 → 266
      AP2; DNA-binding domain in plant proteins such as APETALA2 and EREBPs
      cl00033
      Location:111 → 172
      AP2; DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A0N7KJT8.1 GenPept UniProtKB/Swiss-Prot:A0A0N7KJT8

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