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    LOC117399665 polypeptide N-acetylgalactosaminyltransferase 15-like [ Acipenser ruthenus (sterlet) ]

    Gene ID: 117399665, updated on 26-Oct-2023

    Summary

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    Gene symbol
    LOC117399665
    Gene description
    polypeptide N-acetylgalactosaminyltransferase 15-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Acipenser ruthenus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser
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    Genomic context

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    See LOC117399665 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2023_08 current fAciRut3.2 maternal haplotype (GCF_902713425.1) 4 NC_081192.1 (6036301..6059561, complement)
    101 previous assembly ASM1064508v1 (GCF_010645085.1) 3 NC_048325.1 (100656497..100677669)

    Chromosome 4 - NC_081192.1Genomic Context describing neighboring genes Neighboring gene raftlin-like Neighboring gene oxidoreductase NAD-binding domain containing 1 Neighboring gene putative nuclease HARBI1 Neighboring gene serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    polypeptide N-acetylgalactosaminyltransferase 15-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_902713425.1-RS_2023_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fAciRut3.2 maternal haplotype Primary Assembly

    Genomic

    1. NC_081192.1 Reference fAciRut3.2 maternal haplotype Primary Assembly

      Range
      6036301..6059561 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_033998982.3 → XP_033854873.1  polypeptide N-acetylgalactosaminyltransferase 15-like isoform X2

      Conserved Domains (2) summary
      cd02510
      Location:184 → 482
      pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
      pfam00652
      Location:495 → 617
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

    2. XM_033998981.3 → XP_033854872.1  polypeptide N-acetylgalactosaminyltransferase 15-like isoform X1

      Conserved Domains (2) summary
      cd02510
      Location:184 → 482
      pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
      pfam00652
      Location:495 → 618
      Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

    RNA

    1. XR_004544130.3 RNA Sequence

    2. XR_004544129.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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