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    KLTH0C02112g 40S ribosomal protein S0 [ Lachancea thermotolerans CBS 6340 ]

    Gene ID: 8291179, updated on 21-Dec-2023

    Summary

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    Gene symbol
    KLTH0C02112g
    Gene description
    40S ribosomal protein S0
    Locus tag
    KLTH0C02112g
    Gene type
    protein coding
    RNA name
    40S ribosomal protein S0
    RefSeq status
    PROVISIONAL
    Organism
    Lachancea thermotolerans CBS 6340 (strain: CBS 6340)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Lachancea
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    Genomic context

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    See KLTH0C02112g in Genome Data Viewer
    Location:
    chromosome: C
    Exon count:
    2
    Sequence:
    Chromosome: C; NC_013079.1 (189741..190838, complement)

    Chromosome C - NC_013079.1Genomic Context describing neighboring genes Neighboring gene KLTH0C02068p Neighboring gene mitochondrial 37S ribosomal protein RSM27 Neighboring gene KLTH0C02134p Neighboring gene KLTH0C02156p

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_013079.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparative genomics of protoploid Saccharomycetaceae. Génolevures Consortium, et al. Genome Res, 2009 Oct. PMID 19525356, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribosomal small subunit assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of 90S preribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Names
    40S ribosomal protein S0
    XP_002552320.1
    • highly similar to uniprot|P32905 Saccharomyces cerevisiae YGR214W RPS0A protein component of the small (40S) ribosomal subunit

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_013079.1 Reference assembly

      Range
      189741..190838 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002552274.1 → XP_002552320.1  40S ribosomal protein S0 [Lachancea thermotolerans CBS 6340]

      See identical proteins and their annotated locations for XP_002552320.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      C5DDM1
      Conserved Domains (3) summary
      PTZ00254
      Location:1 → 247
      PTZ00254; 40S ribosomal protein SA; Provisional
      pfam16122
      Location:202 → 251
      40S_SA_C; 40S ribosomal protein SA C-terminus
      cl00315
      Location:12 → 206
      RPS2; Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    C5DDM1.1

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