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    P3H2 prolyl 3-hydroxylase 2 [ Hirundo rustica (Barn swallow) ]

    Gene ID: 120757354, updated on 10-Oct-2024

    Summary

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    Gene symbol
    P3H2
    Gene description
    prolyl 3-hydroxylase 2
    See related
    EnsemblRapid:ENSHRRG00010008077
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Hirundo rustica
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Sylvioidea; Hirundinidae; Hirundo
    Orthologs
    human mouse all
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    Genomic context

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    See P3H2 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2023_07 current bHirRus1.pri.v3 (GCF_015227805.2) 10 NC_053459.1 (15013516..15112218)

    Chromosome 10 - NC_053459.1Genomic Context describing neighboring genes Neighboring gene claudin 16 Neighboring gene claudin 1 Neighboring gene tumor protein p63 Neighboring gene uncharacterized LOC120757452

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_053459.1 Chromosome 10 Reference bHirRus1.pri.v3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-ascorbic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables procollagen-proline 3-dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in collagen metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    prolyl 3-hydroxylase 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_015227805.2-RS_2023_07

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bHirRus1.pri.v3

    Genomic

    1. NC_053459.1 Reference bHirRus1.pri.v3

      Range
      15013516..15112218
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040074630.2 → XP_039930564.1  prolyl 3-hydroxylase 2 isoform X2

      UniProtKB/TrEMBL
      A0A3M0JM86
      Conserved Domains (1) summary
      smart00702
      Location:367 → 565
      P4Hc; Prolyl 4-hydroxylase alpha subunit homologues

    2. XM_040074629.2 → XP_039930563.1  prolyl 3-hydroxylase 2 isoform X1

      UniProtKB/TrEMBL
      A0A7L4ECX3
      Related
      ENSHRRP00010011226.1, ENSHRRT00010011886.2
      Conserved Domains (1) summary
      smart00702
      Location:464 → 662
      P4Hc; Prolyl 4-hydroxylase alpha subunit homologues

    3. XM_058421983.1 → XP_058277966.1  prolyl 3-hydroxylase 2 isoform X3

    Nucleotide Protein
    Heading Accession and Version

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