U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    ZNF780A zinc finger protein 780A [ Homo sapiens (human) ]

    Gene ID: 284323, updated on 5-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ZNF780Aprovided by HGNC
    Official Full Name
    zinc finger protein 780Aprovided by HGNC
    Primary source
    HGNC:HGNC:27603
    See related
    Ensembl:ENSG00000197782 AllianceGenome:HGNC:27603
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ZNF780
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in thyroid (RPKM 2.8), lymph node (RPKM 2.3) and 25 other tissues See more
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See ZNF780A in Genome Data Viewer
    Location:
    19q13.2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (40069152..40090943, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (42889360..42911150, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (40575059..40596850, complement)

    Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene PAT1 homolog 1, processing body mRNA decay factor pseudogene Neighboring gene zinc finger protein 780B Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr19:40541448-40542647 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14637 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:40596583-40597124 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14638 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr19:40613086-40613650 Neighboring gene uncharacterized LOC124904803 Neighboring gene MPRA-validated peak3482 silencer Neighboring gene vomeronasal 1 receptor 96 pseudogene

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. USP7 Regulates Cytokinesis through FBXO38 and KIF20B. Georges A, et al. Sci Rep, 2019 Feb 25. PMID 30804394, Free PMC Article
    2. The DNA sequence and biology of human chromosome 19. Grimwood J, et al. Nature, 2004 Apr 1. PMID 15057824
    3. The in vivo Interaction Landscape of Histones H3.1 and H3.3. Siddaway R, et al. Mol Cell Proteomics, 2022 Oct. PMID 36089195, Free PMC Article
    4. Cullin 3 Exon 9 Deletion in Familial Hyperkalemic Hypertension Impairs Cullin3-Ring-E3 Ligase (CRL3) Dynamic Regulation and Cycling. Kouranti I, et al. Int J Mol Sci, 2022 May 5. PMID 35563538, Free PMC Article
    5. An AP-MS- and BioID-compatible MAC-tag enables comprehensive mapping of protein interactions and subcellular localizations. Liu X, et al. Nat Commun, 2018 Mar 22. PMID 29568061, Free PMC Article

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    zinc finger protein 780A

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001010880.3 → NP_001010880.2  zinc finger protein 780A isoform b

      See identical proteins and their annotated locations for NP_001010880.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and uses an alternate in-frame splice site in the 5' coding region, compared to variant 1, resulting in an isoform (b) that is 1 aa shorter than isoform a. Both variants 2 and 3 encode the same isoform.
      Source sequence(s)
      AC005614, AK091274, BU685481, DA758840, DB097567
      Consensus CDS
      CCDS33026.2
      UniProtKB/Swiss-Prot
      E9PB48, O75290, Q6ZN87
      Related
      ENSP00000341507.5, ENST00000340963.9
      Conserved Domains (5) summary
      smart00349
      Location:6 → 66
      KRAB; krueppel associated box
      COG5048
      Location:219 → 595
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:335 → 355
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:6 → 45
      KRAB; KRAB box
      pfam13465
      Location:376 → 400
      zf-H2C2_2; Zinc-finger double domain

    2. NM_001142577.2 → NP_001136049.1  zinc finger protein 780A isoform a

      See identical proteins and their annotated locations for NP_001136049.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (a).
      Source sequence(s)
      AC005614, AK091274, BC021982, BU685481, DA436454, DA758840
      Consensus CDS
      CCDS46079.1
      UniProtKB/TrEMBL
      Q05CQ7
      Related
      ENSP00000400997.1, ENST00000455521.5
      Conserved Domains (5) summary
      smart00349
      Location:6 → 67
      KRAB; krueppel associated box
      COG5048
      Location:220 → 596
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:336 → 356
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:6 → 45
      KRAB; KRAB box
      pfam13465
      Location:377 → 401
      zf-H2C2_2; Zinc-finger double domain

    3. NM_001142578.2 → NP_001136050.1  zinc finger protein 780A isoform b

      See identical proteins and their annotated locations for NP_001136050.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1, resulting in an isoform (b) that is 1 aa shorter than isoform a. Both variants 2 and 3 encode the same isoform.
      Source sequence(s)
      AC005614, AK091274, BC021982, BU685481, DA758840
      Consensus CDS
      CCDS33026.2
      UniProtKB/Swiss-Prot
      E9PB48, O75290, Q6ZN87
      Related
      ENSP00000506741.1, ENST00000683561.1
      Conserved Domains (5) summary
      smart00349
      Location:6 → 66
      KRAB; krueppel associated box
      COG5048
      Location:219 → 595
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:335 → 355
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:6 → 45
      KRAB; KRAB box
      pfam13465
      Location:376 → 400
      zf-H2C2_2; Zinc-finger double domain

    4. NM_001142579.2 → NP_001136051.1  zinc finger protein 780A isoform c

      See identical proteins and their annotated locations for NP_001136051.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) differs in the 5' UTR, 3' UTR and 3' coding region, uses an alternate in-frame splice site in its mid coding region, and includes an alternate exon containing a distinct translation start codon, compared to variant 1. The resulting isoform (c) has distinct N- and C-termini, and is shorter than isoform a.
      Source sequence(s)
      AC005614, AI638558, AK131328, AW243188
      Consensus CDS
      CCDS46078.1
      UniProtKB/Swiss-Prot
      O75290
      Related
      ENSP00000416294.1, ENST00000414720.6
      Conserved Domains (2) summary
      smart00349
      Location:22 → 82
      KRAB; krueppel associated box
      pfam01352
      Location:22 → 61
      KRAB; KRAB box

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

      Range
      40069152..40090943 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017026619.3 → XP_016882108.1  zinc finger protein 780A isoform X2

      UniProtKB/Swiss-Prot
      E9PB48, O75290, Q6ZN87
      Conserved Domains (5) summary
      smart00349
      Location:6 → 66
      KRAB; krueppel associated box
      COG5048
      Location:219 → 595
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:335 → 355
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:6 → 45
      KRAB; KRAB box
      pfam13465
      Location:376 → 400
      zf-H2C2_2; Zinc-finger double domain

    2. XM_006723150.5 → XP_006723213.1  zinc finger protein 780A isoform X1

      See identical proteins and their annotated locations for XP_006723213.1

      UniProtKB/Swiss-Prot
      O75290
      Conserved Domains (5) summary
      smart00349
      Location:6 → 67
      KRAB; krueppel associated box
      COG5048
      Location:220 → 596
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:336 → 356
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:6 → 45
      KRAB; KRAB box
      pfam13465
      Location:377 → 401
      zf-H2C2_2; Zinc-finger double domain

    3. XM_005258773.4 → XP_005258830.1  zinc finger protein 780A isoform X1

      See identical proteins and their annotated locations for XP_005258830.1

      UniProtKB/Swiss-Prot
      O75290
      Conserved Domains (5) summary
      smart00349
      Location:6 → 67
      KRAB; krueppel associated box
      COG5048
      Location:220 → 596
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:336 → 356
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:6 → 45
      KRAB; KRAB box
      pfam13465
      Location:377 → 401
      zf-H2C2_2; Zinc-finger double domain

    4. XM_017026618.3 → XP_016882107.1  zinc finger protein 780A isoform X2

      UniProtKB/Swiss-Prot
      E9PB48, O75290, Q6ZN87
      Conserved Domains (5) summary
      smart00349
      Location:6 → 66
      KRAB; krueppel associated box
      COG5048
      Location:219 → 595
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:335 → 355
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:6 → 45
      KRAB; KRAB box
      pfam13465
      Location:376 → 400
      zf-H2C2_2; Zinc-finger double domain

    5. XM_011526771.4 → XP_011525073.1  zinc finger protein 780A isoform X1

      See identical proteins and their annotated locations for XP_011525073.1

      UniProtKB/Swiss-Prot
      O75290
      Conserved Domains (5) summary
      smart00349
      Location:6 → 67
      KRAB; krueppel associated box
      COG5048
      Location:220 → 596
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:336 → 356
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:6 → 45
      KRAB; KRAB box
      pfam13465
      Location:377 → 401
      zf-H2C2_2; Zinc-finger double domain

    6. XM_047438631.1 → XP_047294587.1  zinc finger protein 780A isoform X2

      UniProtKB/Swiss-Prot
      E9PB48, O75290, Q6ZN87

    7. XM_011526772.4 → XP_011525074.1  zinc finger protein 780A isoform X1

      See identical proteins and their annotated locations for XP_011525074.1

      UniProtKB/Swiss-Prot
      O75290
      Conserved Domains (5) summary
      smart00349
      Location:6 → 67
      KRAB; krueppel associated box
      COG5048
      Location:220 → 596
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:336 → 356
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:6 → 45
      KRAB; KRAB box
      pfam13465
      Location:377 → 401
      zf-H2C2_2; Zinc-finger double domain

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_009646206.1 Reference GRCh38.p14 PATCHES

      Range
      344295..366086 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054331640.1 → XP_054187615.1  zinc finger protein 780A isoform X2

      UniProtKB/Swiss-Prot
      E9PB48, O75290, Q6ZN87

    2. XM_054331636.1 → XP_054187611.1  zinc finger protein 780A isoform X1

    3. XM_054331637.1 → XP_054187612.1  zinc finger protein 780A isoform X1

    4. XM_054331642.1 → XP_054187617.1  zinc finger protein 780A isoform X2

      UniProtKB/Swiss-Prot
      E9PB48, O75290, Q6ZN87

    5. XM_054331638.1 → XP_054187613.1  zinc finger protein 780A isoform X1

    6. XM_054331641.1 → XP_054187616.1  zinc finger protein 780A isoform X2

      UniProtKB/Swiss-Prot
      E9PB48, O75290, Q6ZN87

    7. XM_054331639.1 → XP_054187614.1  zinc finger protein 780A isoform X1

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060943.1 Alternate T2T-CHM13v2.0

      Range
      42889360..42911150 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054320595.1 → XP_054176570.1  zinc finger protein 780A isoform X2

      UniProtKB/Swiss-Prot
      E9PB48, O75290, Q6ZN87

    2. XM_054320591.1 → XP_054176566.1  zinc finger protein 780A isoform X1

    3. XM_054320592.1 → XP_054176567.1  zinc finger protein 780A isoform X1

    4. XM_054320597.1 → XP_054176572.1  zinc finger protein 780A isoform X2

      UniProtKB/Swiss-Prot
      E9PB48, O75290, Q6ZN87

    5. XM_054320593.1 → XP_054176568.1  zinc finger protein 780A isoform X1

    6. XM_054320596.1 → XP_054176571.1  zinc finger protein 780A isoform X2

      UniProtKB/Swiss-Prot
      E9PB48, O75290, Q6ZN87

    7. XM_054320594.1 → XP_054176569.1  zinc finger protein 780A isoform X1

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O75290.3 GenPept UniProtKB/Swiss-Prot:O75290

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous