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    C9H12orf57 chromosome 9 C12orf57 homolog [ Callithrix jacchus (white-tufted-ear marmoset) ]

    Gene ID: 100409874, updated on 8-Mar-2024

    Summary

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    Gene symbol
    C9H12orf57
    Gene description
    chromosome 9 C12orf57 homolog
    See related
    Ensembl:ENSCJAG00000007272
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Callithrix jacchus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
    Orthologs
    human mouse all
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    Genomic context

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    See C9H12orf57 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 9 NC_071450.1 (19303903..19306471)
    105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 9 NC_048391.1 (19163845..19166403)

    Chromosome 9 - NC_071450.1Genomic Context describing neighboring genes Neighboring gene prolyl 3-hydroxylase 3 Neighboring gene leucine rich repeat containing 23 Neighboring gene enolase 2 Neighboring gene prohibitin 2 Neighboring gene U7 small nuclear RNA Neighboring gene atrophin 1 Neighboring gene U6 spliceosomal RNA Neighboring gene protein tyrosine phosphatase non-receptor type 6 Neighboring gene uncharacterized LOC103795159

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in post-embryonic development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein C10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCalJa1.2.pat.X

    Genomic

    1. NC_071450.1 Reference mCalJa1.2.pat.X

      Range
      19303903..19306471
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054238078.1 → XP_054094053.1  protein C10 isoform X2

    2. XM_002752270.5 → XP_002752316.1  protein C10 isoform X1

      See identical proteins and their annotated locations for XP_002752316.1

      UniProtKB/TrEMBL
      U3BEU4, U3DJE3
      Related
      ENSCJAP00000013544.1
      Conserved Domains (1) summary
      pfam14974
      Location:11 → 113
      P_C10; Protein C10
    Nucleotide Protein
    Heading Accession and Version

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