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    PPP1R3B-DT PPP1R3B divergent transcript [ Homo sapiens (human) ]

    Gene ID: 102724880, updated on 28-Oct-2024

    Summary

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    Official Symbol
    PPP1R3B-DTprovided by HGNC
    Official Full Name
    PPP1R3B divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:56150
    See related
    Ensembl:ENSG00000248538 AllianceGenome:HGNC:56150
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    AC02278.4
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See PPP1R3B-DT in Genome Data Viewer
    Location:
    8p23.1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (9151725..9169597)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (10574444..10592354, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (9009235..9027107)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112268402 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:8989159-8989659 Neighboring gene Sharpr-MPRA regulatory region 9732 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:8997999-8998498 Neighboring gene uncharacterized LOC124901882 Neighboring gene protein phosphatase 1 regulatory subunit 3B Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:9007568-9008516 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26981 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18906 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr8:9040517-9041502 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:9041503-9042488 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:9046079-9047278 Neighboring gene uncharacterized LOC101929128 Neighboring gene ubiquitin-conjugating enzyme E2 variant 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. LncRNA-AC02278.4 Is a Novel Prognostic Biomarker That Promotes Tumor Growth and Metastasis in Lung Adenocarcinoma. Chen X, et al. Front Oncol, 2022. PMID 35463380, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Other Names

    • RP11-10A14.5

    Clone Names

    • AP000695.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_183344.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022784

    2. NR_183345.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022784

    3. NR_183346.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022784

    4. NR_183347.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022784

    5. NR_183348.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022784

    6. NR_183349.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022784
      Related
      ENST00000820987.1

    7. NR_183350.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022784
      Related
      ENST00000820995.1

    8. NR_183351.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022784
      Related
      ENST00000820988.1

    9. NR_183352.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022784

    10. NR_183353.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022784
      Related
      ENST00000820998.1

    11. NR_183354.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022784

    12. NR_183355.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022784
      Related
      ENST00000820990.1

    13. NR_183356.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022784
      Related
      ENST00000648549.3

    14. NR_183357.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC022784

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      9151725..9169597
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_018654717.1 Reference GRCh38.p14 PATCHES

      Range
      4181985..4199904 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      10574444..10592354 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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