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    2310002L09Rik RIKEN cDNA 2310002L09 gene [ Mus musculus (house mouse) ]

    Gene ID: 71886, updated on 2-Nov-2024

    Summary

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    Official Symbol
    2310002L09Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 2310002L09 geneprovided by MGI
    Primary source
    MGI:MGI:1916780
    See related
    Ensembl:ENSMUSG00000028396 AllianceGenome:MGI:1916780
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2310003M01Rik
    Summary
    Located in mitochondrion. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in heart adult (RPKM 5.9), mammary gland adult (RPKM 1.5) and 1 other tissue See more
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    Genomic context

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    See 2310002L09Rik in Genome Data Viewer
    Location:
    4 C3; 4 36.06 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (73857608..73869111, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (73939371..73950874, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene Myb/SANT DNA binding domain containing 5 family member 10 Neighboring gene Myb/SANT DNA binding domain containing 5 family member 9 Neighboring gene FERM domain containing 3 Neighboring gene ribosomal protein L7A pseudogene Neighboring gene STARR-seq mESC enhancer starr_10543 Neighboring gene zinc finger protein 384 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A mitochondrial protein compendium elucidates complex I disease biology. Pagliarini DJ, et al. Cell, 2008 Jul 11. PMID 18614015, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC144293, MGC144294

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in mitochondrion HDA PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC71886

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027104.3 → NP_081380.2  uncharacterized protein LOC71886 isoform 2

      See identical proteins and their annotated locations for NP_081380.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has an alternate 3' terminus, compared to variant 1, that results in a protein (isoform 2) with a shorter and distinct C-terminus, compared to isoform 1.
      Source sequence(s)
      AK009097, AK009124
      Consensus CDS
      CCDS18285.1
      UniProtKB/TrEMBL
      Q14C20, Q14C21, Q9D7M6
      Related
      ENSMUSP00000030101.4, ENSMUST00000030101.4

    2. NM_027981.1 → NP_082257.1  uncharacterized protein LOC71886 isoform 1

      See identical proteins and their annotated locations for NP_082257.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AK009097, AK009124
      Consensus CDS
      CCDS51211.1
      UniProtKB/TrEMBL
      Q14C21, Q9D7L5, Q9D7M6
      Related
      ENSMUSP00000092633.2, ENSMUST00000095023.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      73857608..73869111 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_390343.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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