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    LOC126805777 CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:88079486-88080685 [ Homo sapiens (human) ]

    Gene ID: 126805777, updated on 12-Sep-2024

    Summary

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    Gene symbol
    LOC126805777
    Gene description
    CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:88079486-88080685
    Gene type
    biological region
    Feature type(s)
    regulatory: enhancer
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    This genomic region was validated as an active enhancer by the STARR-seq (self-transcribing active regulatory region sequencing) massively parallel reporter assay in HCT116 colorectal carcinoma cells. This sequence was defined as a group 2 enhancer that depends on the BRD2, BRD4, P300/CBP, MED14 and CDK7 cofactors, with strong dependence on CDK7. [provided by RefSeq, Sep 2022]
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    Genomic context

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    See LOC126805777 in Genome Data Viewer
    Location:
    chromosome: 1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (87613803..87615002)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (87457027..87458226)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (88079486..88080685)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378834 Neighboring gene RNA, 5S ribosomal pseudogene 52 Neighboring gene uncharacterized LOC107985408 Neighboring gene uncharacterized LOC105378835 Neighboring gene VISTA enhancer hs1161 Neighboring gene VISTA enhancer hs1217 Neighboring gene uncharacterized LOC107985518 Neighboring gene VISTA enhancer hs1002 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:88149733-88150234 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:88151217-88151832 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:88153692-88154891 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:88188659-88189364 Neighboring gene Sharpr-MPRA regulatory region 1395 Neighboring gene uncharacterized LOC124904212 Neighboring gene MPRA-validated peak307 silencer

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Differential cofactor dependencies define distinct types of human enhancers. Neumayr C, et al. Nature, 2022 Jun. PMID 35650434, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_082101.1 

      Range
      101..1300
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      87613803..87615002
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      87457027..87458226
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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