U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    LOC106401855 probable beta-1,3-galactosyltransferase 2 [ Brassica napus (rape) ]

    Gene ID: 106401855, updated on 30-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC106401855
    Gene description
    probable beta-1,3-galactosyltransferase 2
    Locus tag
    HID58_064042
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Brassica napus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC106401855 in Genome Data Viewer
    Location:
    chromosome: C5
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    102 current Da-Ae (GCF_020379485.1) C5 NC_063448.1 (1796963..1799988, complement)
    101 previous assembly Bra_napus_v2.0 (GCF_000686985.2) C5 NC_027771.2 (2348491..2351437, complement)

    Chromosome C5 - NC_063448.1Genomic Context describing neighboring genes Neighboring gene uncharacterized TPR repeat-containing protein At1g05150 Neighboring gene ent-kaurenoic acid oxidase 1 Neighboring gene NEDD8-activating enzyme E1 regulatory subunit AXR1 Neighboring gene 50S ribosomal protein L6, chloroplastic

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hexosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    probable beta-1,3-galactosyltransferase 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Brassica napus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Da-Ae Primary Assembly

    Genomic

    1. NC_063448.1 Reference Da-Ae Primary Assembly

      Range
      1796963..1799988 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_048757770.1 → XP_048613727.1  probable beta-1,3-galactosyltransferase 2 isoform X1

    2. XM_048757771.1 → XP_048613728.1  probable beta-1,3-galactosyltransferase 2 isoform X2

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases